All Classes
Analysis
Analysis
AnalysisDAO
AnalysisMapper
Analyzed
ArchivesConnection
AssembledDNASequence
Assembly
AssemblyDAO
AssemblyExceptions
AssemblyExceptionType
AssemblyExceptionTypeHandler
BacteriaConnection
BacterialCollectionException
BacterialGeneHomologues
BacterialSyntenies
BinaryRelationship
BioinformaticsPublicationExamples
BooleanTypeHandler
Chromosome
Chromosome
ChromosomeCaching
ChromosomeDAO
ChromosomeMapper
CodonTable
CollectionCoreDatabase
CollectionDatabase
CollectionOfSpecies
CollectionSpecies
CommandLineConfiguration
Compara
ComparisonDatabase
ComponentAssembledSequencesOfChromosomes
ConfigurationException
ConsequencesHandler
Coordinate
Coordinate.Strand
CoordinateSet
CoordinateSystem
CoordinateSystemDAO
CoordinateSystemDefaultVersionTypeHandler
CoordinateSystemSeqLevelTypeHandler
CoordinateSystemTypeHandler
CoordSystemType
CoreDatabase
CoreObject
CoreObjectType
DAAnalysis
DAAnalyzedFeature
DAAssembledDNASequence
DAAssembly
DAChromosome
DACoordinateSystem
DACoreObject
DADNASequence
DAEnsemblDNASequenceReader
DAEnsemblDNASequenceReader.EmptyIterator
DAExon
DAFeature
DAFeature.Status
DAGene
DAHomologyPairRelationship
DAHomologyRelationship
DAObject
DAObject.DAComparator
DAOCollectionCoreFactory
DAOCollectionFactory
DAOCollectionFuncgenFactory
DAOCollectionVariationFactory
DAOComparaFactory
DAOCoreFactory
DAOException
DAOFactory
DAOFactoryWithAnalyses
DAOFuncgenFactory
DAOSingleSpeciesCoreFactory
DAOSingleSpeciesFactory
DAOSpeciesFactory
DAOVariationFactory
DAProteinFeature
Database
DatabaseDAO
DatabaseMapper
DatabaseType
DatabaseWithExternalDBs
DATranscript
DATranslation
DAVariation
DAVariationXRef
DAXRef
DBAnalysisDAO
DBAssemblyDAO
DBBaseDAO
DBChromosomeDAO
DBCollection
DBCollectionCoreDatabase
DBCollectionDatabase
DBCollectionSpecies
DBComparisonDatabase
DBConnection
DBConnection.DataSource
DBCoordinateSystemDAO
DBCoreObjectDAO
DBDAOCollectionCoreFactory
DBDAOCollectionFactory
DBDAOCollectionFuncgenFactory
DBDAOCollectionVariationFactory
DBDAOComparaFactory
DBDAOFactory
DBDAOSingleSpeciesCoreFactory
DBDAOSingleSpeciesFactory
DBDAOSingleSpeciesFuncgenFactory
DBDAOSingleSpeciesVariationFactory
DBDAOSpeciesFactory
DBDatabase
DBDNASequenceDAO
DBExonDAO
DBGeneDAO
DBHomologyDAO
DBProteinFeatureDAO
DBRegistry
DBResultHandler
DBSingleSpeciesCoreDatabase
DBSingleSpeciesDatabase
DBSingleSpeciesVariationDatabase
DBSpecies
DBTranscriptDAO
DBTranslationDAO
DBVariationDAO
DBXRefDAO
DNASequence
DNASequenceDAO
DNASequences
EnsemblComparaDivision
EnsemblConnection
EnsemblCoordSystemType
EnsemblCoreObjectType
EnsemblDBType
EnsemblDNACompoundSet
EnsemblDNASequenceReader
EnsemblException
EnsemblGeneHomologues
EnsemblRuntimeException
EnsemblSyntenies
EnsemblType
Evidence
ExaminingObjectHashCodes
ExistsTypeHandler
Exon
Exon.Phase
ExonDAO
ExonMapper
ExonsTranscriptionAndTranslation
ExternalDB
ExternalDBType
ExternalDBTypeHandler
Feature
FeatureQuery
FeatureType
GapSequence
Gene
GeneDAO
GeneMapper
Genes
GenomesConnection
GoEvidence
GoEvidenceCodes
GoEvidenceCodeTypeHandler
GroupRelationship
HashMapHolder
HomologyAlignmentProperties
HomologyCounts
HomologyDAO
HomologyPairMapper
HomologyPairRelationship
HomologyRelationship
HomologyType
HomologyTypeHandler
IdentifiableObject
InitialisationMapper
InverseBinaryRelationshipView
InverseHomologyPairRelationshipView
LoadLocalConfigurationProperties
LoadLocalDatasourceProperties
LogicFromArkMAP
LogicFromSavantPlugin
MappableObject
Mapping
MappingSet
NonUniqueException
ObjectType
PlantGeneHomologues
PlantsSyntenies
ProteinFeature
ProteinFeatureDAO
ProteinFeatureMapper
RangeException
Registry
Registry
RegistryConfiguration
RegistryFactory
RegistryProvider
ReInitializationDAO
RelationshipType
RevalidateAndLazyLoadSequences
SchemaVersion
scratch
SequenceMapper
SingleSpeciesCoreDatabase
SingleSpeciesDatabase
SingleSpeciesVariationDatabase
Species
SpeciesAliases
SpeciesMapper
SpeciesVersions
SpeciesWithNoChromosomes
StableID
Synonyms
Transcript
TranscriptDAO
TranscriptionAndTranslation
TranscriptionAndTranslationReverse
TranscriptMapper
Translation
TranslationDAO
TranslationMapper
UserChristelle
UserJeanPhilippe
UserSetzermann
Variation
Variation
VariationDAO
VariationDatabase
VariationMapper
VariationMapping
Variations
VariationScript
VariationType
VariationTypeHandler
VariationXRefHandler
VegaAndCCDSIDs
VegaFeature
WithDisplayXRef
XRef
XRefDAO
XRefed
XRefMapper
XRefs