uk.ac.roslin.ensembl.dao.factory

Interface DAOCoreFactory

All Superinterfaces:

DAOFactory, DAOFactoryWithAnalyses

All Known Subinterfaces:

DAOCollectionCoreFactory, DAOSingleSpeciesCoreFactory

All Known Implementing Classes:

DBDAOCollectionCoreFactory, DBDAOSingleSpeciesCoreFactory

public interface DAOCoreFactory
extends DAOFactoryWithAnalyses

Method Summary

Methods

Modifier and Type	Method and Description
AssemblyDAO	getAssemblyDAO()
ChromosomeDAO	getChromosomeDAO()
DAOComparaFactory	getComparaFactory(EnsemblComparaDivision comparaDivision)
CoordinateSystemDAO	getCoordinateSystemDAO()
CoreDatabase	getDatabase()
ExonDAO	getExonDAO()
GeneDAO	getGeneDAO()
ProteinFeatureDAO	getProteinFeatureDAO()
DNASequenceDAO	getSequenceDAO()
TranscriptDAO	getTranscriptDAO()
TranslationDAO	getTranslationDAO()
DAOVariationFactory	getVariationFactory()
XRefDAO	getXRefDAO()
boolean	hasVariationFactory()

Methods inherited from interface uk.ac.roslin.ensembl.dao.factory.DAOFactoryWithAnalyses

getAnalysis, getAnalysisDAO

Methods inherited from interface uk.ac.roslin.ensembl.dao.factory.DAOFactory

getConfiguration, getDatabaseName, getDBType, getDBVersion, getEnsemblSchemaVersion, getMybatisSchemaFilePath, getNewSqlSession, getRegistry, setDatabaseName, setDBType, setDBVersion, setEnsemblSchemaVersion, setMybatisSchemaFilePath

Method Detail

getDatabase

CoreDatabase getDatabase()

Specified by:

getDatabase in interface DAOFactory

getGeneDAO

GeneDAO getGeneDAO()
                   throws DAOException

Throws:

DAOException

getProteinFeatureDAO

ProteinFeatureDAO getProteinFeatureDAO()
                                       throws DAOException

Throws:

DAOException

getChromosomeDAO

ChromosomeDAO getChromosomeDAO()
                               throws DAOException

Throws:

DAOException

getCoordinateSystemDAO

CoordinateSystemDAO getCoordinateSystemDAO()
                                           throws DAOException

Throws:

DAOException

getAssemblyDAO

AssemblyDAO getAssemblyDAO()
                           throws DAOException

Throws:

DAOException

getSequenceDAO

DNASequenceDAO getSequenceDAO()
                              throws DAOException

Throws:

DAOException

getTranslationDAO

TranslationDAO getTranslationDAO()
                                 throws DAOException

Throws:

DAOException

getTranscriptDAO

TranscriptDAO getTranscriptDAO()
                               throws DAOException

Throws:

DAOException

getExonDAO

ExonDAO getExonDAO()
                   throws DAOException

Throws:

DAOException

getComparaFactory

DAOComparaFactory getComparaFactory(EnsemblComparaDivision comparaDivision)

getXRefDAO

XRefDAO getXRefDAO()
                   throws DAOException

Throws:

DAOException

getVariationFactory

DAOVariationFactory getVariationFactory()

hasVariationFactory

boolean hasVariationFactory()