uk.ac.roslin.ensembl.dao.coreaccess

Interface AssemblyDAO

All Known Implementing Classes:

DBAssemblyDAO

public interface AssemblyDAO

Author:

paterson

Method Summary

Methods

Modifier and Type	Method and Description
MappingSet	getComponentMappingsByStartStop(DNASequence assembledSequence, Integer start, Integer stop)
MappingSet	getPARMappingsByStartStop(Chromosome chr, Integer start, Integer stop)

Method Detail

getComponentMappingsByStartStop

MappingSet getComponentMappingsByStartStop(DNASequence assembledSequence,
                                         Integer start,
                                         Integer stop)
                                           throws DAOException

Throws:

DAOException

getPARMappingsByStartStop

MappingSet getPARMappingsByStartStop(Chromosome chr,
                                   Integer start,
                                   Integer stop)
                                     throws DAOException

Throws:

DAOException