uk.ac.roslin.ensembl.model

Class MappingSet

java.lang.Object

java.util.AbstractCollection<E>

java.util.AbstractSet<E>

java.util.TreeSet<Mapping>

uk.ac.roslin.ensembl.model.MappingSet

All Implemented Interfaces:

Serializable, Cloneable, Iterable<Mapping>, Collection<Mapping>, NavigableSet<Mapping>, Set<Mapping>, SortedSet<Mapping>

public class MappingSet
extends TreeSet<Mapping>
implements Serializable

Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {

Author:

tpaterso

See Also:

Serialized Form

Constructor Summary

Constructors

Constructor and Description
MappingSet() Parameterless constructor creates a MappingSet, that is sorted using the Mapping.mappingOnSourceComparator.
MappingSet(Comparator differentComparator) Alternative constructor allowing specification of an alternative comparator for sorting (e.g.

Method Summary

Methods

Modifier and Type	Method and Description
Coordinate	getExtent() Returns a Coordinate representing the extent or range of this MappingSet.
CoordinateSet	getSourceCoordinates() Returns a CoordinateSet containing all of the Source Coordinates of Mappings in this MappingSet.
CoordinateSet	getTargetCoordinates() Returns a CoordinateSet containing all of the Target Coordinates of Mappings in this MappingSet.

Methods inherited from class java.util.TreeSet

add, addAll, ceiling, clear, clone, comparator, contains, descendingIterator, descendingSet, first, floor, headSet, headSet, higher, isEmpty, iterator, last, lower, pollFirst, pollLast, remove, size, subSet, subSet, tailSet, tailSet

Methods inherited from class java.util.AbstractSet

equals, hashCode, removeAll

Methods inherited from class java.util.AbstractCollection

containsAll, retainAll, toArray, toArray, toString

Methods inherited from class java.lang.Object

finalize, getClass, notify, notifyAll, wait, wait, wait

Methods inherited from interface java.util.Set

containsAll, equals, hashCode, removeAll, retainAll, toArray, toArray

Constructor Detail

MappingSet

public MappingSet()

Parameterless constructor creates a MappingSet, that is sorted using the Mapping.mappingOnSourceComparator.

MappingSet

public MappingSet(Comparator differentComparator)

Alternative constructor allowing specification of an alternative comparator for sorting (e.g. Mapping.mappingOnTargetComparator)

Parameters:

differentComparator -

Method Detail

getExtent

public Coordinate getExtent()

Returns a Coordinate representing the extent or range of this MappingSet. This is either based on the Source Coordinates if the MappingOnSourceComparator is used, or based on the Target Coordinates if the MappingOnTArgetComparator is used

Returns:

Coordinate

getSourceCoordinates

public CoordinateSet getSourceCoordinates()

Returns a CoordinateSet containing all of the Source Coordinates of Mappings in this MappingSet.

Returns:

CoordinateSet

getTargetCoordinates

public CoordinateSet getTargetCoordinates()

Returns a CoordinateSet containing all of the Target Coordinates of Mappings in this MappingSet.

Returns:

CoordinateSet