uk.ac.roslin.ensembl.model.core

Interface Chromosome

All Superinterfaces:

Accessioned, AssembledDNASequence, CoreObject, DNASequence, IdentifiableObject, Iterable<NucleotideCompound>, MappableObject, Sequence<NucleotideCompound>, Serializable

All Known Implementing Classes:

DAChromosome

public interface Chromosome
extends AssembledDNASequence

Author:

paterson

Method Summary

Methods

Modifier and Type	Method and Description
String	getChromosomeName()
Chromosome	getParChromosome()
MappingSet	getPseudoAutosomalRegion()
boolean	isPAR()
void	setChromosomeName(String name)

Methods inherited from interface uk.ac.roslin.ensembl.model.core.AssembledDNASequence

getCompleteAssembly

Methods inherited from interface uk.ac.roslin.ensembl.model.core.DNASequence

getCodonTableID, getCoordSystem, getDBSeqLength, getGenesOnRegion, getGenesOnRegion, getGenesOnRegion, getMappedRegions, getName, getObjectTypeMappings, getPaddedReverseComplementSequenceAsString, getPaddedSequenceAsString, getRegionsOfConservedSynteny, getRegionsOfConservedSynteny, getReverseComplementSequenceAsString, getReverseComplementSequenceAsString, getSequenceAsString, getVariationMappingsOnRegion, getVariationMappingsOnRegion, getVariationsOnRegion, getVariationsOnRegion, setCoordSystem, setDBSeqLength, setName

Methods inherited from interface uk.ac.roslin.ensembl.model.core.CoreObject

getAssembly, getSpecies, setSpecies

Methods inherited from interface uk.ac.roslin.ensembl.model.MappableObject

addMapping, clearAllMappings, getLoadedMappings, getLoadedMappings

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, getType, setId

Methods inherited from interface org.biojava3.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Methods inherited from interface java.lang.Iterable

iterator

Methods inherited from interface org.biojava3.core.sequence.template.Accessioned

getAccession

Method Detail

getChromosomeName

String getChromosomeName()

setChromosomeName

void setChromosomeName(String name)

isPAR

boolean isPAR()

getPseudoAutosomalRegion

MappingSet getPseudoAutosomalRegion()

getParChromosome

Chromosome getParChromosome()