uk.ac.roslin.ensembl.model.core

Interface AssembledDNASequence

All Superinterfaces:

Accessioned, CoreObject, DNASequence, IdentifiableObject, Iterable<NucleotideCompound>, MappableObject, Sequence<NucleotideCompound>, Serializable

All Known Subinterfaces:

Chromosome

All Known Implementing Classes:

DAAssembledDNASequence, DAChromosome

public interface AssembledDNASequence
extends DNASequence

Author:

paterson

Method Summary

Methods

Modifier and Type	Method and Description
Assembly	getCompleteAssembly()

Methods inherited from interface uk.ac.roslin.ensembl.model.core.DNASequence

getCodonTableID, getCoordSystem, getDBSeqLength, getGenesOnRegion, getGenesOnRegion, getGenesOnRegion, getMappedRegions, getName, getObjectTypeMappings, getPaddedReverseComplementSequenceAsString, getPaddedSequenceAsString, getRegionsOfConservedSynteny, getRegionsOfConservedSynteny, getReverseComplementSequenceAsString, getReverseComplementSequenceAsString, getSequenceAsString, getVariationMappingsOnRegion, getVariationMappingsOnRegion, getVariationsOnRegion, getVariationsOnRegion, setCoordSystem, setDBSeqLength, setName

Methods inherited from interface uk.ac.roslin.ensembl.model.core.CoreObject

getAssembly, getSpecies, setSpecies

Methods inherited from interface uk.ac.roslin.ensembl.model.MappableObject

addMapping, clearAllMappings, getLoadedMappings, getLoadedMappings

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, getType, setId

Methods inherited from interface org.biojava3.core.sequence.template.Sequence

countCompounds, getAsList, getCompoundAt, getCompoundSet, getIndexOf, getInverse, getLastIndexOf, getLength, getSequenceAsString, getSubSequence

Methods inherited from interface java.lang.Iterable

iterator

Methods inherited from interface org.biojava3.core.sequence.template.Accessioned

getAccession

Method Detail

getCompleteAssembly

Assembly getCompleteAssembly()