Uses of Interface
uk.ac.roslin.ensembl.model.core.AssembledDNASequence

Packages that use AssembledDNASequence

Package	Description
uk.ac.roslin.ensembl.dao.coreaccess
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.database

Uses of AssembledDNASequence in uk.ac.roslin.ensembl.dao.coreaccess

Methods in uk.ac.roslin.ensembl.dao.coreaccess that return AssembledDNASequence

Modifier and Type	Method and Description
AssembledDNASequence	ChromosomeDAO.getFragmentByName(String name)

Methods in uk.ac.roslin.ensembl.dao.coreaccess that return types with arguments of type AssembledDNASequence

Modifier and Type	Method and Description
List<? extends AssembledDNASequence>	ChromosomeDAO.getFragments()

Uses of AssembledDNASequence in uk.ac.roslin.ensembl.datasourceaware.core

Classes in uk.ac.roslin.ensembl.datasourceaware.core that implement AssembledDNASequence

Modifier and Type	Class and Description
class	DAAssembledDNASequence
class	DAChromosome A DAChromosome is a particular type of DAAssembledDNASequence for representing whole chromosomes.

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type AssembledDNASequence

Modifier and Type	Method and Description
void	DAAssembly.setParent(AssembledDNASequence parent) Sets the DAAssembledDNASequence that this assembly holds (its 'Parent').

Uses of AssembledDNASequence in uk.ac.roslin.ensembl.model.core

Subinterfaces of AssembledDNASequence in uk.ac.roslin.ensembl.model.core

Modifier and Type	Interface and Description
interface	Chromosome

Methods in uk.ac.roslin.ensembl.model.core that return AssembledDNASequence

Modifier and Type	Method and Description
AssembledDNASequence	Species.getFragmentByName(String name)
AssembledDNASequence	Species.getFragmentByName(String name, String dbVersion)
AssembledDNASequence	Assembly.getParent()

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type AssembledDNASequence

Modifier and Type	Method and Description
TreeMap<String,? extends AssembledDNASequence>	Species.getFragments()
TreeMap<String,? extends AssembledDNASequence>	Species.getFragments(String dbVersion)

Methods in uk.ac.roslin.ensembl.model.core with parameters of type AssembledDNASequence

Modifier and Type	Method and Description
void	Assembly.setParent(AssembledDNASequence parent)

Uses of AssembledDNASequence in uk.ac.roslin.ensembl.model.database

Methods in uk.ac.roslin.ensembl.model.database that return AssembledDNASequence

Modifier and Type	Method and Description
AssembledDNASequence	CollectionCoreDatabase.getFragmentByName(Species species, String name)
AssembledDNASequence	SingleSpeciesCoreDatabase.getFragmentByName(String name)

Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type AssembledDNASequence

Modifier and Type	Method and Description
List<? extends AssembledDNASequence>	SingleSpeciesCoreDatabase.getFragments()
List<? extends AssembledDNASequence>	CollectionCoreDatabase.getFragments(Species species)