uk.ac.roslin.ensembl.model.core

Interface Assembly

All Known Implementing Classes:

DAAssembly

public interface Assembly

Author:

paterson

Method Summary

Methods

Modifier and Type	Method and Description
Integer	getAssemblyStart()
Integer	getAssemblyStop()
MappingSet	getMappings()
AssembledDNASequence	getParent()
MappingSet	getStitchedMappings()
void	setAssemblyStart(Integer assemblyStart)
void	setAssemblyStop(Integer assemblyStop)
void	setParent(AssembledDNASequence parent)

Method Detail

getParent

AssembledDNASequence getParent()

setParent

void setParent(AssembledDNASequence parent)

getAssemblyStart

Integer getAssemblyStart()

setAssemblyStart

void setAssemblyStart(Integer assemblyStart)

getAssemblyStop

Integer getAssemblyStop()

setAssemblyStop

void setAssemblyStop(Integer assemblyStop)

getMappings

MappingSet getMappings()
                       throws DAOException

Throws:

DAOException

getStitchedMappings

MappingSet getStitchedMappings()
                               throws DAOException,
                                      RangeException

Throws:

DAOException

RangeException