uk.ac.roslin.ensembl.dao.variation

Interface VariationDAO

All Known Implementing Classes:

DBVariationDAO

public interface VariationDAO

Method Summary

Methods

Modifier and Type	Method and Description
Variation	getUniquelyMappedVariation(String variationName)
List<? extends Variation>	getUniquelyMappedVariations(List<String> variationNames)
List<? extends Mapping>	getVariationMappingsOnRegion(DNASequence region, Coordinate coords)
List<? extends Variation>	getVariationsOnRegion(DNASequence region, Coordinate coords)

Method Detail

getVariationMappingsOnRegion

List<? extends Mapping> getVariationMappingsOnRegion(DNASequence region,
                                                   Coordinate coords)
                                                     throws DAOException

Throws:

DAOException

getVariationsOnRegion

List<? extends Variation> getVariationsOnRegion(DNASequence region,
                                              Coordinate coords)
                                                throws DAOException

Throws:

DAOException

getUniquelyMappedVariation

Variation getUniquelyMappedVariation(String variationName)
                                     throws DAOException

Throws:

DAOException

getUniquelyMappedVariations

List<? extends Variation> getUniquelyMappedVariations(List<String> variationNames)
                                                      throws DAOException

Throws:

DAOException