uk.ac.roslin.ensembl.model.compara

Interface HomologyRelationship<CLAZZ extends Gene>

All Superinterfaces:

GroupRelationship<CLAZZ>, IdentifiableObject, Serializable

All Known Subinterfaces:

HomologyPairRelationship<CLAZZ>

All Known Implementing Classes:

DAHomologyPairRelationship, DAHomologyRelationship, InverseHomologyPairRelationshipView

public interface HomologyRelationship<CLAZZ extends Gene>
extends GroupRelationship<CLAZZ>

Ensembl schema and PerlAPI claims that homology relationships are not necessarily only binary, i.e. the could have more than two members.

Method Summary

Methods

Modifier and Type	Method and Description
String	getLastCommonAncestor()
HomologyType	getRelationshipType() Gets the RelationshipType of this Relationship
List<? extends Species>	getSpecies()

Methods inherited from interface uk.ac.roslin.ensembl.model.relationship.GroupRelationship

getMembers, setRelationshipType

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, getType, setId

Method Detail

getRelationshipType

HomologyType getRelationshipType()

Description copied from interface: GroupRelationship

Gets the RelationshipType of this Relationship

Specified by:

getRelationshipType in interface GroupRelationship<CLAZZ extends Gene>

Returns:

RelationshipType

getLastCommonAncestor

String getLastCommonAncestor()

getSpecies

List<? extends Species> getSpecies()