uk.ac.roslin.ensembl.datasourceaware.compara

Class DAHomologyRelationship

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.DAObject

uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyRelationship

All Implemented Interfaces:

Serializable, HomologyRelationship<DAGene>, IdentifiableObject, GroupRelationship<DAGene>

Direct Known Subclasses:

DAHomologyPairRelationship

public class DAHomologyRelationship
extends DAObject
implements HomologyRelationship<DAGene>

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

DAObject.DAComparator

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

daComparator, daoFactory, dbVersion, id, registry, schemaVersion

Constructor Summary

Constructors

Constructor and Description
DAHomologyRelationship()

Method Summary

Methods

Modifier and Type	Method and Description
String	getLastCommonAncestor()
TreeSet<DAGene>	getMembers()
HomologyType	getRelationshipType() Gets the RelationshipType of this Relationship
List<Species>	getSpecies()
HomologyType	getType()
void	setLastCommonAncestor(String lastCommonAncestor)
void	setRelationshipType(RelationshipType type) Sets the RelationshipType of this Relationship
void	setType(HomologyType type)

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

getDaoFactory, getDBVersion, getHashID, getId, getRegistry, getSchemaVersion, isLazyloadAllowed, setDaoFactory, setId, setLazyloadAllowed, setRegistry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, setId

Constructor Detail

DAHomologyRelationship

public DAHomologyRelationship()

Method Detail

getMembers

public TreeSet<DAGene> getMembers()

Specified by:

getMembers in interface GroupRelationship<DAGene>

getType

public HomologyType getType()

Specified by:

getType in interface IdentifiableObject

setType

public void setType(HomologyType type)

getLastCommonAncestor

public String getLastCommonAncestor()

Specified by:

getLastCommonAncestor in interface HomologyRelationship<DAGene>

getSpecies

public List<Species> getSpecies()

Specified by:

getSpecies in interface HomologyRelationship<DAGene>

setLastCommonAncestor

public void setLastCommonAncestor(String lastCommonAncestor)

getRelationshipType

public HomologyType getRelationshipType()

Description copied from interface: GroupRelationship

Gets the RelationshipType of this Relationship

Specified by:

getRelationshipType in interface HomologyRelationship<DAGene>

Specified by:

getRelationshipType in interface GroupRelationship<DAGene>

Returns:

RelationshipType

setRelationshipType

public void setRelationshipType(RelationshipType type)

Description copied from interface: GroupRelationship

Sets the RelationshipType of this Relationship

Specified by:

setRelationshipType in interface GroupRelationship<DAGene>

Parameters:

type - RelationshipType