uk.ac.roslin.ensembl.datasourceaware.compara

Class DAHomologyPairRelationship

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.DAObject

uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyRelationship

uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyPairRelationship

All Implemented Interfaces:

Serializable, HomologyPairRelationship<DAGene>, HomologyRelationship<DAGene>, IdentifiableObject, BinaryRelationship<DAGene>, GroupRelationship<DAGene>

Direct Known Subclasses:

InverseHomologyPairRelationshipView

public class DAHomologyPairRelationship
extends DAHomologyRelationship
implements HomologyPairRelationship<DAGene>

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

DAObject.DAComparator

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

daComparator, daoFactory, dbVersion, id, registry, schemaVersion

Constructor Summary

Constructors

Constructor and Description
DAHomologyPairRelationship()

Method Summary

Methods

Modifier and Type	Method and Description
TreeSet<DAGene>	getMembers()
DAGene	getSource() Returns the source Attributable in the relationship
HomologyAlignmentProperties	getSourceProperties()
List<Species>	getSpecies()
DAGene	getTarget() Returns the target IdentifiableObject in the relationship
HomologyAlignmentProperties	getTargetProperties()
void	setSource(DAGene source) sets the IdentifiableObject source in the relationship
void	setSourceProperties(HomologyAlignmentProperties sourceProperties)
void	setTarget(DAGene target) Sets the IdentifiableObject target in the relationship
void	setTargetProperties(HomologyAlignmentProperties targetProperties)

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyRelationship

getLastCommonAncestor, getRelationshipType, getType, setLastCommonAncestor, setRelationshipType, setType

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

getDaoFactory, getDBVersion, getHashID, getId, getRegistry, getSchemaVersion, isLazyloadAllowed, setDaoFactory, setId, setLazyloadAllowed, setRegistry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.model.compara.HomologyRelationship

getLastCommonAncestor, getRelationshipType

Methods inherited from interface uk.ac.roslin.ensembl.model.relationship.GroupRelationship

setRelationshipType

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, getType, setId

Constructor Detail

DAHomologyPairRelationship

public DAHomologyPairRelationship()

Method Detail

getMembers

public TreeSet<DAGene> getMembers()

Specified by:

getMembers in interface GroupRelationship<DAGene>

Overrides:

getMembers in class DAHomologyRelationship

getSpecies

public List<Species> getSpecies()

Specified by:

getSpecies in interface HomologyRelationship<DAGene>

Overrides:

getSpecies in class DAHomologyRelationship

getSourceProperties

public HomologyAlignmentProperties getSourceProperties()

Specified by:

getSourceProperties in interface HomologyPairRelationship<DAGene>

getTargetProperties

public HomologyAlignmentProperties getTargetProperties()

Specified by:

getTargetProperties in interface HomologyPairRelationship<DAGene>

setSourceProperties

public void setSourceProperties(HomologyAlignmentProperties sourceProperties)

setTargetProperties

public void setTargetProperties(HomologyAlignmentProperties targetProperties)

setSource

public void setSource(DAGene source)

Description copied from interface: BinaryRelationship

sets the IdentifiableObject source in the relationship

Specified by:

setSource in interface BinaryRelationship<DAGene>

Parameters:

source - an IdentifiableObject reference

setTarget

public void setTarget(DAGene target)

Description copied from interface: BinaryRelationship

Sets the IdentifiableObject target in the relationship

Specified by:

setTarget in interface BinaryRelationship<DAGene>

Parameters:

target - The target IdentifiableObject in the relationship

getSource

public DAGene getSource()

Description copied from interface: BinaryRelationship

Returns the source Attributable in the relationship

Specified by:

getSource in interface BinaryRelationship<DAGene>

Returns:

IdentifiableObject reference

getTarget

public DAGene getTarget()

Description copied from interface: BinaryRelationship

Returns the target IdentifiableObject in the relationship

Specified by:

getTarget in interface BinaryRelationship<DAGene>

Returns:

IdentifiableObject target reference