Uses of Class
uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyPairRelationship

Packages that use DAHomologyPairRelationship

Package	Description
uk.ac.roslin.ensembl.dao.database.compara
uk.ac.roslin.ensembl.datasourceaware.compara
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.mapper.compara

Uses of DAHomologyPairRelationship in uk.ac.roslin.ensembl.dao.database.compara

Methods in uk.ac.roslin.ensembl.dao.database.compara that return types with arguments of type DAHomologyPairRelationship

Modifier and Type	Method and Description
List<DAHomologyPairRelationship>	DBHomologyDAO.getHomologiesForGene(Gene g) Data Access method to retrieve all of the homologies (i.e. to all species) for a given gene with a stableID.
List<DAHomologyPairRelationship>	DBHomologyDAO.getHomologiesForGenesBySpecies(List<? extends Gene> genes, Species target_sp, String chrName) Data Access method to retrieve all of the homologies in the specified target species for a List of genes with stableIDs.

Uses of DAHomologyPairRelationship in uk.ac.roslin.ensembl.datasourceaware.compara

Subclasses of DAHomologyPairRelationship in uk.ac.roslin.ensembl.datasourceaware.compara

Modifier and Type	Class and Description
class	InverseHomologyPairRelationshipView

Methods in uk.ac.roslin.ensembl.datasourceaware.compara that return DAHomologyPairRelationship

Modifier and Type	Method and Description
DAHomologyPairRelationship	InverseHomologyPairRelationshipView.getBinaryRelationship()

Constructors in uk.ac.roslin.ensembl.datasourceaware.compara with parameters of type DAHomologyPairRelationship

Constructor and Description
InverseHomologyPairRelationshipView(DAHomologyPairRelationship original)

Uses of DAHomologyPairRelationship in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return types with arguments of type DAHomologyPairRelationship

Modifier and Type	Method and Description
List<DAHomologyPairRelationship>	DAGene.getHomologies() Returns all Homologies (as a List of HomologyPairRelationships) in the default ComparaDivision for this Gene.
List<DAHomologyPairRelationship>	DAGene.getHomologies(EnsemblComparaDivision comparaDivision) Returns all Homologies (as a List of HomologyPairRelationships) in the specified ComparaDivision for this Gene.
List<DAHomologyPairRelationship>	DAGene.getHomologies(EnsemblComparaDivision comparaDivision, Species sp) Returns Homologies (as a List of HomologyPairRelationships) in the specified ComparaDivision for the specified Species.
List<DAHomologyPairRelationship>	DAGene.getHomologies(Species sp) Returns Homologies (as a List of HomologyPairRelationships) in the default ComparaDivision for this Gene for the specified Species.
List<DAHomologyPairRelationship>	DAGene.getHomologiesWithoutLazyLoad() Utility method to get all of the current DAHomologyPairRelationships for this Gene

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type DAHomologyPairRelationship

Modifier and Type	Method and Description
void	DAGene.addHomology(EnsemblComparaDivision division, DAHomologyPairRelationship homology)

Uses of DAHomologyPairRelationship in uk.ac.roslin.ensembl.mapper.compara

Methods in uk.ac.roslin.ensembl.mapper.compara that return types with arguments of type DAHomologyPairRelationship

Modifier and Type	Method and Description
List<DAHomologyPairRelationship>	HomologyPairMapper.getHomologiesForGene(Gene g)
List<DAHomologyPairRelationship>	HomologyPairMapper.getHomologiesForGenesBySpecies(HashMap parameter)