uk.ac.roslin.ensembl.datasourceaware.compara

Class InverseHomologyPairRelationshipView

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.DAObject

uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyRelationship

uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyPairRelationship

uk.ac.roslin.ensembl.datasourceaware.compara.InverseHomologyPairRelationshipView

All Implemented Interfaces:

Serializable, HomologyPairRelationship<DAGene>, HomologyRelationship<DAGene>, IdentifiableObject, BinaryRelationship<DAGene>, GroupRelationship<DAGene>, InverseBinaryRelationshipView<DAHomologyPairRelationship>

public class InverseHomologyPairRelationshipView
extends DAHomologyPairRelationship
implements InverseBinaryRelationshipView<DAHomologyPairRelationship>

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

DAObject.DAComparator

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

daComparator, daoFactory, dbVersion, id, registry, schemaVersion

Constructor Summary

Constructors

Constructor and Description
InverseHomologyPairRelationshipView(DAHomologyPairRelationship original)

Method Summary

Methods

Modifier and Type	Method and Description
DAHomologyPairRelationship	getBinaryRelationship() Returns the underlying binary relationship that this is a view on
String	getLastCommonAncestor()
TreeSet<DAGene>	getMembers()
HomologyType	getRelationshipType() Gets the RelationshipType of this Relationship
DAGene	getSource() Returns the source Attributable in the relationship
HomologyAlignmentProperties	getSourceProperties()
List<Species>	getSpecies()
DAGene	getTarget() Returns the target IdentifiableObject in the relationship
HomologyAlignmentProperties	getTargetProperties()
HomologyType	getType()

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyPairRelationship

setSource, setSourceProperties, setTarget, setTargetProperties

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.compara.DAHomologyRelationship

setLastCommonAncestor, setRelationshipType, setType

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

getDaoFactory, getDBVersion, getHashID, getId, getRegistry, getSchemaVersion, isLazyloadAllowed, setDaoFactory, setId, setLazyloadAllowed, setRegistry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.model.relationship.GroupRelationship

setRelationshipType

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, setId

Constructor Detail

InverseHomologyPairRelationshipView

public InverseHomologyPairRelationshipView(DAHomologyPairRelationship original)

Method Detail

getSourceProperties

public HomologyAlignmentProperties getSourceProperties()

Specified by:

getSourceProperties in interface HomologyPairRelationship<DAGene>

Overrides:

getSourceProperties in class DAHomologyPairRelationship

getTargetProperties

public HomologyAlignmentProperties getTargetProperties()

Specified by:

getTargetProperties in interface HomologyPairRelationship<DAGene>

Overrides:

getTargetProperties in class DAHomologyPairRelationship

getSource

public DAGene getSource()

Description copied from interface: BinaryRelationship

Returns the source Attributable in the relationship

Specified by:

getSource in interface BinaryRelationship<DAGene>

Specified by:

getSource in interface InverseBinaryRelationshipView<DAHomologyPairRelationship>

Overrides:

getSource in class DAHomologyPairRelationship

Returns:

IdentifiableObject reference

getTarget

public DAGene getTarget()

Description copied from interface: BinaryRelationship

Returns the target IdentifiableObject in the relationship

Specified by:

getTarget in interface BinaryRelationship<DAGene>

Specified by:

getTarget in interface InverseBinaryRelationshipView<DAHomologyPairRelationship>

Overrides:

getTarget in class DAHomologyPairRelationship

Returns:

IdentifiableObject target reference

getBinaryRelationship

public DAHomologyPairRelationship getBinaryRelationship()

Description copied from interface: InverseBinaryRelationshipView

Returns the underlying binary relationship that this is a view on

Specified by:

getBinaryRelationship in interface InverseBinaryRelationshipView<DAHomologyPairRelationship>

Returns:

Object of Class <CLAZZ extends BinaryRelationship<? extends IdentifiableObject>>

getMembers

public TreeSet<DAGene> getMembers()

Specified by:

getMembers in interface GroupRelationship<DAGene>

Overrides:

getMembers in class DAHomologyPairRelationship

getSpecies

public List<Species> getSpecies()

Specified by:

getSpecies in interface HomologyRelationship<DAGene>

Overrides:

getSpecies in class DAHomologyPairRelationship

getType

public HomologyType getType()

Specified by:

getType in interface IdentifiableObject

Overrides:

getType in class DAHomologyRelationship

getRelationshipType

public HomologyType getRelationshipType()

Description copied from interface: GroupRelationship

Gets the RelationshipType of this Relationship

Specified by:

getRelationshipType in interface HomologyRelationship<DAGene>

Specified by:

getRelationshipType in interface GroupRelationship<DAGene>

Overrides:

getRelationshipType in class DAHomologyRelationship

Returns:

RelationshipType

getLastCommonAncestor

public String getLastCommonAncestor()

Specified by:

getLastCommonAncestor in interface HomologyRelationship<DAGene>

Overrides:

getLastCommonAncestor in class DAHomologyRelationship