uk.ac.roslin.ensembl.model.core

Interface Gene

All Superinterfaces:

Analyzed, Feature, IdentifiableObject, MappableObject, Serializable, WithDisplayXRef

All Known Implementing Classes:

DAGene

public interface Gene
extends Feature, Analyzed, WithDisplayXRef

Method Summary

Methods

Modifier and Type	Method and Description
String	getBiotype()
Transcript	getCanonicalTranscript()
Translation	getCanonicalTranslation()
String	getDescription()
List<? extends HomologyPairRelationship>	getHomologies()
List<? extends HomologyPairRelationship>	getHomologies(EnsemblComparaDivision speciesGroup)
List<? extends HomologyPairRelationship>	getHomologies(EnsemblComparaDivision speciesGroup, Species sp)
List<? extends HomologyPairRelationship>	getHomologies(Species sp)
List<? extends HomologyPairRelationship>	getHomologiesWithoutLazyLoad()
Collection<? extends Transcript>	getTranscripts()

Methods inherited from interface uk.ac.roslin.ensembl.model.core.Feature

addMappedObjectType, getChromosomeMapping, getChromosomeMapping, getChromosomeMappings, isCurrent, isObjectTypeMapped

Methods inherited from interface uk.ac.roslin.ensembl.model.MappableObject

addMapping, clearAllMappings, getLoadedMappings, getLoadedMappings

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, getType, setId

Methods inherited from interface uk.ac.roslin.ensembl.model.core.Analyzed

getAnalysis, getAnalysisID, setAnalysisID

Methods inherited from interface uk.ac.roslin.ensembl.model.core.WithDisplayXRef

getDisplayXRef

Method Detail

getDescription

String getDescription()

getBiotype

String getBiotype()

getCanonicalTranscript

Transcript getCanonicalTranscript()

getCanonicalTranslation

Translation getCanonicalTranslation()

getTranscripts

Collection<? extends Transcript> getTranscripts()

getHomologies

List<? extends HomologyPairRelationship> getHomologies()

getHomologies

List<? extends HomologyPairRelationship> getHomologies(Species sp)

getHomologies

List<? extends HomologyPairRelationship> getHomologies(EnsemblComparaDivision speciesGroup)

getHomologies

List<? extends HomologyPairRelationship> getHomologies(EnsemblComparaDivision speciesGroup,
                                                     Species sp)

getHomologiesWithoutLazyLoad

List<? extends HomologyPairRelationship> getHomologiesWithoutLazyLoad()