uk.ac.roslin.ensembl.model.core

Interface Transcript

All Superinterfaces:

Analyzed, Feature, IdentifiableObject, MappableObject, Serializable, WithDisplayXRef

All Known Implementing Classes:

DATranscript

public interface Transcript
extends Feature, Analyzed, WithDisplayXRef

Author:

tpaterso

Method Summary

Methods

Modifier and Type	Method and Description
Translation	getCanonicalTranslation()
String	getCcdsID() Returns any curated CCDS for this transcript.
Set<? extends XRef>	getCCDSXRefs()
Collection<? extends Exon>	getExons()
Gene	getGene()
Collection<? extends Translation>	getTranslations()
boolean	isTranslated()

Methods inherited from interface uk.ac.roslin.ensembl.model.core.Feature

addMappedObjectType, getChromosomeMapping, getChromosomeMapping, getChromosomeMappings, isCurrent, isObjectTypeMapped

Methods inherited from interface uk.ac.roslin.ensembl.model.MappableObject

addMapping, clearAllMappings, getLoadedMappings, getLoadedMappings

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, getType, setId

Methods inherited from interface uk.ac.roslin.ensembl.model.core.Analyzed

getAnalysis, getAnalysisID, setAnalysisID

Methods inherited from interface uk.ac.roslin.ensembl.model.core.WithDisplayXRef

getDisplayXRef

Method Detail

isTranslated

boolean isTranslated()

getCanonicalTranslation

Translation getCanonicalTranslation()

getTranslations

Collection<? extends Translation> getTranslations()

getGene

Gene getGene()

getExons

Collection<? extends Exon> getExons()

getCcdsID

String getCcdsID()

Returns any curated CCDS for this transcript.

getCCDSXRefs

Set<? extends XRef> getCCDSXRefs()