Uses of Interface
uk.ac.roslin.ensembl.model.core.Transcript

Packages that use Transcript

Package	Description
uk.ac.roslin.ensembl.dao.coreaccess
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.mapper.core
uk.ac.roslin.ensembl.model.core

Uses of Transcript in uk.ac.roslin.ensembl.dao.coreaccess

Methods in uk.ac.roslin.ensembl.dao.coreaccess that return Transcript

Modifier and Type	Method and Description
Transcript	TranscriptDAO.getTranscriptByID(Integer id)
Transcript	TranscriptDAO.getTranscriptByStableID(String stableID)

Methods in uk.ac.roslin.ensembl.dao.coreaccess that return types with arguments of type Transcript

Modifier and Type	Method and Description
List<? extends Transcript>	TranscriptDAO.getTranscriptsForCcdsID(String id) Returns a list of Ensembl Transcripts matching the query CCDS ID string.
List<? extends Transcript>	TranscriptDAO.getTranscriptsForGene(Gene gene)
List<? extends Transcript>	TranscriptDAO.getTranscriptsForVegaID(String id) Returns a list of Ensembl Transcripts matching the query VegaID string.

Methods in uk.ac.roslin.ensembl.dao.coreaccess with parameters of type Transcript

Modifier and Type	Method and Description
List<? extends Exon>	ExonDAO.getExonsForTranscript(Transcript transcript)
List<? extends Translation>	TranslationDAO.getTranslationsForTranscript(Transcript transcript)

Uses of Transcript in uk.ac.roslin.ensembl.dao.database.coreaccess

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess with parameters of type Transcript

Modifier and Type	Method and Description
List<DAExon>	DBExonDAO.getExonsForTranscript(Transcript transcript)
List<DATranslation>	DBTranslationDAO.getTranslationsForTranscript(Transcript transcript)

Uses of Transcript in uk.ac.roslin.ensembl.datasourceaware.core

Classes in uk.ac.roslin.ensembl.datasourceaware.core that implement Transcript

Modifier and Type	Class and Description
class	DATranscript

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type Transcript

Modifier and Type	Method and Description
void	DAGene.addTranscript(Transcript transcript)
void	DATranslation.setTranscript(Transcript transcript)
void	DAExon.setTranscript(Transcript transcript)

Uses of Transcript in uk.ac.roslin.ensembl.mapper.core

Methods in uk.ac.roslin.ensembl.mapper.core with parameters of type Transcript

Modifier and Type	Method and Description
List<DATranslation>	TranslationMapper.getTranslationsForTranscript(Transcript transcript)

Uses of Transcript in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core that return Transcript

Modifier and Type	Method and Description
Transcript	Gene.getCanonicalTranscript()
Transcript	Translation.getTranscript()
Transcript	Species.getTranscriptByStableID(String stableID)
Transcript	Species.getTranscriptByStableID(String stableID, String dbVersion)

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type Transcript

Modifier and Type	Method and Description
Collection<? extends Transcript>	Gene.getTranscripts()
List<? extends Transcript>	Species.getTranscriptsForCcdsID(String ccdsID)
List<? extends Transcript>	Species.getTranscriptsForCcdsID(String ccdsID, String dbVersion)
List<? extends Transcript>	Species.getTranscriptsForVegaID(String vegaID)
List<? extends Transcript>	Species.getTranscriptsForVegaID(String vegaID, String dbVersion)

Methods in uk.ac.roslin.ensembl.model.core with parameters of type Transcript

Modifier and Type	Method and Description
void	Translation.setTranscript(Transcript transcript)