uk.ac.roslin.ensembl.dao.database.coreaccess

Class DBExonDAO

java.lang.Object

uk.ac.roslin.ensembl.dao.database.DBBaseDAO

uk.ac.roslin.ensembl.dao.database.coreaccess.DBCoreObjectDAO

uk.ac.roslin.ensembl.dao.database.coreaccess.DBExonDAO

All Implemented Interfaces:

ExonDAO, ReInitializationDAO

public class DBExonDAO
extends DBCoreObjectDAO
implements ExonDAO

Nested Class Summary

Nested Classes

Modifier and Type	Class and Description
class	DBExonDAO.ExonRowHandler

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.dao.database.coreaccess.DBCoreObjectDAO

collFactory, singleSpecies, species, ssFactory

Fields inherited from class uk.ac.roslin.ensembl.dao.database.DBBaseDAO

configuration, daoFactory

Constructor Summary

Constructors

Constructor and Description
DBExonDAO()
DBExonDAO(DAOCollectionCoreFactory factory)
DBExonDAO(DAOSingleSpeciesCoreFactory factory)

Method Summary

Methods

Modifier and Type	Method and Description
DAExon	getExonByID(Integer id)
DAExon	getExonByStableID(String stableID)
List<DAExon>	getExonsForTranscript(Transcript transcript)
void	reInitialize(IdentifiableObject object) Uses the stableid of an object to fill in missing data

Methods inherited from class uk.ac.roslin.ensembl.dao.database.coreaccess.DBCoreObjectDAO

getDAOFactory, getSpecies, isSingleSpecies, setFactory, setFactory

Methods inherited from class uk.ac.roslin.ensembl.dao.database.DBBaseDAO

getFactory, setConfiguration, setFactory

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

DBExonDAO

public DBExonDAO()

DBExonDAO

public DBExonDAO(DAOSingleSpeciesCoreFactory factory)
          throws DAOException

Throws:

DAOException

DBExonDAO

public DBExonDAO(DAOCollectionCoreFactory factory)
          throws DAOException

Throws:

DAOException

Method Detail

reInitialize

public void reInitialize(IdentifiableObject object)
                  throws DAOException

Uses the stableid of an object to fill in missing data

Specified by:

reInitialize in interface ReInitializationDAO

Parameters:

object -

Throws:

DAOException

getExonByID

public DAExon getExonByID(Integer id)
                   throws DAOException

Specified by:

getExonByID in interface ExonDAO

Parameters:

id -

Throws:

DAOException

getExonByStableID

public DAExon getExonByStableID(String stableID)
                         throws DAOException

Specified by:

getExonByStableID in interface ExonDAO

Parameters:

stableID -

Throws:

DAOException

getExonsForTranscript

public List<DAExon> getExonsForTranscript(Transcript transcript)
                                   throws DAOException

Specified by:

getExonsForTranscript in interface ExonDAO

Throws:

DAOException