uk.ac.roslin.ensembl.dao.database

Class DBDatabase

java.lang.Object

uk.ac.roslin.ensembl.dao.database.DBDatabase

All Implemented Interfaces:

Comparable<Database>, Database

Direct Known Subclasses:

DBCollectionDatabase, DBComparisonDatabase, DBSingleSpeciesDatabase

public abstract class DBDatabase
extends Object
implements Database

Author:

paterson

Constructor Summary

Constructors

Constructor and Description
DBDatabase()
DBDatabase(String db_name, EnsemblDBType type, Registry registry)

Method Summary

Methods

Modifier and Type	Method and Description
int	compareTo(Database other)
String	getBuild()
String	getdBClassifier()
String	getdBName()
String	getDBVersion()
int	getIntDBVersion()
int	getIntSchemaVersion()
org.apache.ibatis.session.SqlSession	getNewSqlSession()
Registry	getRegistry()
String	getSchemaVersion()
protected org.apache.ibatis.session.SqlSessionFactory	getSessionFactory()
EnsemblDBType	getType()
void	setBuild(String build)
void	setdBName(String dBName)
void	setDBVersion(String version)
void	setIntDBVersion(int intVersion)
void	setIntSchemaVersion(int intEnsemblSchemaVersion)
void	setRegistry(Registry r)
void	setSchemaVersion(String ensemblSchemaVersion)
void	setType(EnsemblDBType type)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DBDatabase

public DBDatabase()

DBDatabase

public DBDatabase(String db_name,
          EnsemblDBType type,
          Registry registry)
           throws ConfigurationException

Throws:

ConfigurationException

Method Detail

getdBName

public String getdBName()

Specified by:

getdBName in interface Database

setdBName

public final void setdBName(String dBName)

getType

public EnsemblDBType getType()

Specified by:

getType in interface Database

setType

public void setType(EnsemblDBType type)

getDBVersion

public String getDBVersion()

Specified by:

getDBVersion in interface Database

setDBVersion

public final void setDBVersion(String version)

getIntDBVersion

public int getIntDBVersion()

Specified by:

getIntDBVersion in interface Database

setIntDBVersion

public void setIntDBVersion(int intVersion)

getSchemaVersion

public String getSchemaVersion()

Specified by:

getSchemaVersion in interface Database

setSchemaVersion

public void setSchemaVersion(String ensemblSchemaVersion)

getIntSchemaVersion

public int getIntSchemaVersion()

Specified by:

getIntSchemaVersion in interface Database

setIntSchemaVersion

public void setIntSchemaVersion(int intEnsemblSchemaVersion)

getBuild

public String getBuild()

Specified by:

getBuild in interface Database

setBuild

public void setBuild(String build)

compareTo

public int compareTo(Database other)

Specified by:

compareTo in interface Comparable<Database>

getRegistry

public Registry getRegistry()

Specified by:

getRegistry in interface Database

setRegistry

public final void setRegistry(Registry r)

toString

public String toString()

Overrides:

toString in class Object

getdBClassifier

public String getdBClassifier()

Specified by:

getdBClassifier in interface Database

getSessionFactory

protected org.apache.ibatis.session.SqlSessionFactory getSessionFactory()
                                                                 throws DAOException

Throws:

DAOException

getNewSqlSession

public org.apache.ibatis.session.SqlSession getNewSqlSession()
                                                      throws DAOException

Specified by:

getNewSqlSession in interface Database

Throws:

DAOException