EnsemblDBType (JEnsembl: A Java API for Ensembl Data Access 1.78 API)

java.lang.Object
- uk.ac.roslin.ensembl.config.EnsemblType
- - uk.ac.roslin.ensembl.config.EnsemblDBType

All Implemented Interfaces:

Serializable, Comparable<EnsemblDBType>, DatabaseType, ObjectType
```
public class EnsemblDBType
extends EnsemblType
implements DatabaseType, Comparable<EnsemblDBType>
```
Concrete implementation of DatabaseType interface for representing static Ensembl DatabaseTypes. Implements static strings representing each of the current enesmbl database types, and concrete DatabaseTypes for each of these string types.

Author:

paterson

See Also:
Serialized Form

Field Summary

Fields
Modifier and Type	Field and Description
`static EnsemblDBType`	`ancestral` A concrete instantiation of an DatabaseType object representing the ensembl ancestral database sType
`static EnsemblDBType`	`cdna` A concrete instantiation of an DatabaseType object representing the ensembl species cDNA database sType
`static EnsemblDBType`	`collection_core` A concrete instantiation of an DatabaseType object representing the ensemblgenomes collection core database sType
`static EnsemblDBType`	`collection_funcgen` A concrete instantiation of an DatabaseType object representing the ensemblgenomes collection funcgen database sType
`static EnsemblDBType`	`collection_variation` A concrete instantiation of an DatabaseType object representing the ensemblgenomes collection variation database sType
`static EnsemblDBType`	`compara` A concrete instantiation of an DatabaseType object representing the ensembl compara database sType
`static EnsemblDBType`	`core` A concrete instantiation of an DatabaseType object representing the ensembl species core database sType
`static EnsemblDBType`	`coreexpressionatlas`
`static EnsemblDBType`	`coreexpressionest` A concrete instantiation of an DatabaseType object representing the ensembl species coreexpressioncdna database sType
`static EnsemblDBType`	`coreexpressiongnf` A concrete instantiation of an DatabaseType object representing the ensembl species coreexpressiongnf database sType
`static EnsemblDBType`	`funcgen` A concrete instantiation of an DatabaseType object representing the ensembl species funcgen database sType
`static EnsemblDBType`	`go` A concrete instantiation of an DatabaseType object representing the ensembl go database sType
`static EnsemblDBType`	`ontology` A concrete instantiation of an DatabaseType object representing the ensembl ontology database sType
`static EnsemblDBType`	`otherfeatures` A concrete instantiation of an DatabaseType object representing the ensembl species otherfeatures database sType
`static EnsemblDBType`	`rnaseq`
`static EnsemblDBType`	`variation` A concrete instantiation of an DatabaseType object representing the ensembl species variation database sType
`static EnsemblDBType`	`vega` A concrete instantiation of an DatabaseType object representing the ensembl species vega database sType
`static EnsemblDBType`	`website` A concrete instantiation of an DatabaseType object representing the ensembl website database sType

Fields inherited from class uk.ac.roslin.ensembl.config.EnsemblType
label

Method Summary

Methods
Modifier and Type	Method and Description
`int`	`compareTo(EnsemblDBType other)`
`boolean`	`equals(Object obj)` Overrides the Object method to test for equality
`static Collection<EnsemblDBType>`	`getAllDatabaseTypes()`
`static TreeSet<EnsemblDBType>`	`getCollectionDatabaseTypes()`
`static EnsemblDBType`	`getDBTypeForName(String typeName)` Public Method to return the static EnsemblDBType for a typeName.
`static TreeSet<EnsemblDBType>`	`getSingleSpeciesDatabaseTypes()`
`static TreeSet<EnsemblDBType>`	`getSpeciesComparisonDatabaseTypes()`
`int`	`hashCode()` Overrides Object method to generate a hashCode
`String`	`toString()` We often use the constants in a String context, so this routine allows us to do that easily

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Field Detail
  - cdna
```
public static EnsemblDBType cdna
```
    A concrete instantiation of an DatabaseType object representing the ensembl species cDNA database sType
  - rnaseq
```
public static EnsemblDBType rnaseq
```
  - core
```
public static EnsemblDBType core
```
    A concrete instantiation of an DatabaseType object representing the ensembl species core database sType
  - coreexpressionest
```
public static EnsemblDBType coreexpressionest
```
    A concrete instantiation of an DatabaseType object representing the ensembl species coreexpressioncdna database sType
  - coreexpressiongnf
```
public static EnsemblDBType coreexpressiongnf
```
    A concrete instantiation of an DatabaseType object representing the ensembl species coreexpressiongnf database sType
  - coreexpressionatlas
```
public static EnsemblDBType coreexpressionatlas
```
  - funcgen
```
public static EnsemblDBType funcgen
```
    A concrete instantiation of an DatabaseType object representing the ensembl species funcgen database sType
  - otherfeatures
```
public static EnsemblDBType otherfeatures
```
    A concrete instantiation of an DatabaseType object representing the ensembl species otherfeatures database sType
  - variation
```
public static EnsemblDBType variation
```
    A concrete instantiation of an DatabaseType object representing the ensembl species variation database sType
  - vega
```
public static EnsemblDBType vega
```
    A concrete instantiation of an DatabaseType object representing the ensembl species vega database sType
  - ancestral
```
public static EnsemblDBType ancestral
```
    A concrete instantiation of an DatabaseType object representing the ensembl ancestral database sType
  - compara
```
public static EnsemblDBType compara
```
    A concrete instantiation of an DatabaseType object representing the ensembl compara database sType
  - go
```
public static EnsemblDBType go
```
    A concrete instantiation of an DatabaseType object representing the ensembl go database sType
  - ontology
```
public static EnsemblDBType ontology
```
    A concrete instantiation of an DatabaseType object representing the ensembl ontology database sType
  - website
```
public static EnsemblDBType website
```
    A concrete instantiation of an DatabaseType object representing the ensembl website database sType
  - collection_core
```
public static EnsemblDBType collection_core
```
    A concrete instantiation of an DatabaseType object representing the ensemblgenomes collection core database sType
  - collection_funcgen
```
public static EnsemblDBType collection_funcgen
```
    A concrete instantiation of an DatabaseType object representing the ensemblgenomes collection funcgen database sType
  - collection_variation
```
public static EnsemblDBType collection_variation
```
    A concrete instantiation of an DatabaseType object representing the ensemblgenomes collection variation database sType
- Method Detail
  - toString
```
public String toString()
```
    We often use the constants in a String context, so this routine allows us to do that easily
    
    Overrides:
    
    toString in class EnsemblType
    
    Returns:
    The String name of this EnsemblDBType object
  - equals
```
public boolean equals(Object obj)
```
    Overrides the Object method to test for equality
    
    Overrides:
    
    equals in class Object
    
    Parameters:
    obj - the reference object with which to compare.
    
    Returns:
    true if this object is the same as the obj argument; false otherwise.
  - hashCode
```
public int hashCode()
```
    Overrides Object method to generate a hashCode
    
    Overrides:
    
    hashCode in class Object
    
    Returns:
    a hash code value for this object.
  - getDBTypeForName
```
public static EnsemblDBType getDBTypeForName(String typeName)
```
    Public Method to return the static EnsemblDBType for a typeName. Checks to see if the supplied sType is the name of a valid EnsemblDBType and returns the corresponding EnsemblDBType object if it is, or returns null if not; also returns null if the typeHashList is not initialized.
    
    Parameters:
    typeName - String
    
    Returns:
    EnsemblDBType for the query typeName
  - getSpeciesComparisonDatabaseTypes
```
public static TreeSet<EnsemblDBType> getSpeciesComparisonDatabaseTypes()
```
  - getSingleSpeciesDatabaseTypes
```
public static TreeSet<EnsemblDBType> getSingleSpeciesDatabaseTypes()
```
  - getCollectionDatabaseTypes
```
public static TreeSet<EnsemblDBType> getCollectionDatabaseTypes()
```
  - getAllDatabaseTypes
```
public static Collection<EnsemblDBType> getAllDatabaseTypes()
```
  - compareTo
```
public int compareTo(EnsemblDBType other)
```
    Specified by:
    
    compareTo in interface Comparable<EnsemblDBType>

Class EnsemblDBType

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.config.EnsemblType

Method Summary

Methods inherited from class java.lang.Object

Field Detail

cdna

rnaseq

core

coreexpressionest

coreexpressiongnf

coreexpressionatlas

funcgen

otherfeatures

variation

vega

ancestral

compara

go

ontology

website

collection_core

collection_funcgen

collection_variation

Method Detail

toString

equals

hashCode

getDBTypeForName

getSpeciesComparisonDatabaseTypes

getSingleSpeciesDatabaseTypes

getCollectionDatabaseTypes

getAllDatabaseTypes

compareTo