uk.ac.roslin.ensembl.dao.database

Class DBCollection

java.lang.Object

uk.ac.roslin.ensembl.dao.database.DBCollection

All Implemented Interfaces:

CollectionOfSpecies

public class DBCollection
extends Object
implements CollectionOfSpecies

Constructor Summary

Constructors

Constructor and Description
DBCollection()
DBCollection(DBCollectionCoreDatabase database)

Method Summary

Methods

Modifier and Type	Method and Description
void	addDatabases(TreeSet<? extends CollectionDatabase> databases)
void	addSpecies(Collection<? extends CollectionSpecies> spp)
void	addSpecies(CollectionSpecies sp)
String	getCollectionName()
DBCollectionCoreDatabase	getCoreDatabase()
TreeSet<DBCollectionDatabase>	getDatabases()
TreeSet<DBCollectionDatabase>	getDatabasesByType(DatabaseType type)
String	getDBVersion()
String	getSchemaVersion()
TreeSet<DBCollectionSpecies>	getSpecies()
void	resortSpecies() Finalization method to be called after all species have been added to all collections.
void	setPrimaryCoreDatabase(DBCollectionCoreDatabase database)
void	setProperty(String id, HashMap row)
String	toString()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

DBCollection

public DBCollection()

DBCollection

public DBCollection(DBCollectionCoreDatabase database)

Method Detail

setPrimaryCoreDatabase

public void setPrimaryCoreDatabase(DBCollectionCoreDatabase database)

setProperty

public void setProperty(String id,
               HashMap row)

Specified by:

setProperty in interface CollectionOfSpecies

getDBVersion

public String getDBVersion()

Specified by:

getDBVersion in interface CollectionOfSpecies

getCollectionName

public String getCollectionName()

Specified by:

getCollectionName in interface CollectionOfSpecies

getDatabases

public TreeSet<DBCollectionDatabase> getDatabases()

Specified by:

getDatabases in interface CollectionOfSpecies

addDatabases

public void addDatabases(TreeSet<? extends CollectionDatabase> databases)

Specified by:

addDatabases in interface CollectionOfSpecies

getSpecies

public TreeSet<DBCollectionSpecies> getSpecies()

Specified by:

getSpecies in interface CollectionOfSpecies

addSpecies

public void addSpecies(Collection<? extends CollectionSpecies> spp)

Specified by:

addSpecies in interface CollectionOfSpecies

addSpecies

public void addSpecies(CollectionSpecies sp)

Specified by:

addSpecies in interface CollectionOfSpecies

getCoreDatabase

public DBCollectionCoreDatabase getCoreDatabase()

Specified by:

getCoreDatabase in interface CollectionOfSpecies

getSchemaVersion

public String getSchemaVersion()

Specified by:

getSchemaVersion in interface CollectionOfSpecies

getDatabasesByType

public TreeSet<DBCollectionDatabase> getDatabasesByType(DatabaseType type)

Specified by:

getDatabasesByType in interface CollectionOfSpecies

toString

public String toString()

Overrides:

toString in class Object

resortSpecies

public void resortSpecies()

Finalization method to be called after all species have been added to all collections. This sets all the species to have the most recent dbstyle name, and all the TreeSets in the collections to be remade - because they will sort on this.