uk.ac.roslin.ensembl.mapper.core

Interface ChromosomeMapper

public interface ChromosomeMapper

Method Summary

Methods

Modifier and Type	Method and Description
List<HashMap>	getAssemblyExceptions(HashMap parameters)
DAChromosome	getChromosomeByName_CoordSysID(HashMap parameter)
List<DAChromosome>	getChromosomesByCoordSysID(HashMap parameter)
String	getSexLinkedChromosomeName(HashMap parameter)
DAAssembledDNASequence	getTopLevelFragmentByName_CoordSysID(HashMap parameter)
List<DAAssembledDNASequence>	getTopLevelFragmentsByCoordSysID(HashMap parameter)

Method Detail

getChromosomeByName_CoordSysID

DAChromosome getChromosomeByName_CoordSysID(HashMap parameter)

getTopLevelFragmentByName_CoordSysID

DAAssembledDNASequence getTopLevelFragmentByName_CoordSysID(HashMap parameter)

getChromosomesByCoordSysID

List<DAChromosome> getChromosomesByCoordSysID(HashMap parameter)

getTopLevelFragmentsByCoordSysID

List<DAAssembledDNASequence> getTopLevelFragmentsByCoordSysID(HashMap parameter)

getSexLinkedChromosomeName

String getSexLinkedChromosomeName(HashMap parameter)

getAssemblyExceptions

List<HashMap> getAssemblyExceptions(HashMap parameters)