uk.ac.roslin.ensembl.mapper.variation

Interface VariationMapper

public interface VariationMapper

Author:

tpaterso

Method Summary

Methods

Modifier and Type	Method and Description
List<VariationMapping>	getMappingsOnParentSequence(FeatureQuery query)
List<DAVariation>	getUniquelyMappedVariations(FeatureQuery q)
List<DAVariation>	getVariationsOnParentSequence(FeatureQuery query)
List<HashMap>	setFeatureCS()

Method Detail

getMappingsOnParentSequence

List<VariationMapping> getMappingsOnParentSequence(FeatureQuery query)

getVariationsOnParentSequence

List<DAVariation> getVariationsOnParentSequence(FeatureQuery query)

setFeatureCS

List<HashMap> setFeatureCS()

getUniquelyMappedVariations

List<DAVariation> getUniquelyMappedVariations(FeatureQuery q)