uk.ac.roslin.ensembl.datasourceaware.variation

Class VariationMapping

java.lang.Object

uk.ac.roslin.ensembl.model.Mapping

uk.ac.roslin.ensembl.datasourceaware.variation.VariationMapping

All Implemented Interfaces:

Serializable

public class VariationMapping
extends Mapping

Author:

tpaterso

See Also:

Serialized Form

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.model.Mapping

mappingOnSourceComparator, mappingOnTargetComparator, reverseMapping, source, sourceCoordinates, sourceCoordSystem, target, targetCoordinates, targetCoordSystem

Constructor Summary

Constructors

Constructor and Description
VariationMapping()

Method Summary

Methods

Modifier and Type	Method and Description
static boolean	addReverseMapping(VariationMapping originalMapping)
String	getAlleleString()
List<VariationType>	getConsequences()
Integer	getId()
VariationMapping	getReverseMapping()
void	setAlleleString(String alleleString)
void	setConsequences(List<VariationType> consequences)
void	setId(Integer id)

Methods inherited from class uk.ac.roslin.ensembl.model.Mapping

addReverseMapping, equals, getSource, getSourceCoordinates, getSourceHashID, getSourceType, getTarget, getTargetCoordinates, getTargetHashID, getTargetType, hashCode, setReverseMapping, setSource, setSourceCoordinates, setSourceCoordinates, setSourceCoordinates, setTarget, setTargetCoordinates, setTargetCoordinates, setTargetCoordinates

Methods inherited from class java.lang.Object

clone, finalize, getClass, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

VariationMapping

public VariationMapping()

Method Detail

getAlleleString

public String getAlleleString()

setAlleleString

public void setAlleleString(String alleleString)

getConsequences

public List<VariationType> getConsequences()

setConsequences

public void setConsequences(List<VariationType> consequences)

getId

public Integer getId()

setId

public void setId(Integer id)

getReverseMapping

public VariationMapping getReverseMapping()

Overrides:

getReverseMapping in class Mapping

addReverseMapping

public static boolean addReverseMapping(VariationMapping originalMapping)