uk.ac.roslin.ensembl.datasourceaware.core

Class DAAnalyzedFeature

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.DAObject

uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject

uk.ac.roslin.ensembl.datasourceaware.core.DAFeature

uk.ac.roslin.ensembl.datasourceaware.core.DAAnalyzedFeature

All Implemented Interfaces:

Serializable, Analyzed, CoreObject, Feature, IdentifiableObject, MappableObject, StableID

Direct Known Subclasses:

DAGene, DATranscript

public abstract class DAAnalyzedFeature
extends DAFeature
implements Analyzed

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DAFeature

DAFeature.Status

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

DAObject.DAComparator

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DAFeature

current, description, displayName, displayXRef, initialized, length, mappedObjectTypes, mappings, objectTypeMappings, status, thisSequence

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject

comparaFactories, creationDate, modificationDate, species, stableID, version

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

daComparator, daoFactory, dbVersion, id, registry, schemaVersion

Constructor Summary

Constructors

Constructor and Description
DAAnalyzedFeature()
DAAnalyzedFeature(DAOCoreFactory factory)

Method Summary

Methods

Modifier and Type	Method and Description
DAAnalysis	getAnalysis()
Integer	getAnalysisID()
void	setAnalysisID(Integer analysisID)

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DAFeature

addMappedObjectType, addMapping, clearAllMappings, convertChromosomePositionToFeature, convertToTargetCoordinate, convertToTargetPosition, getAnnotationLevelMappings, getBuildLevelMappings, getChromosomeMapping, getChromosomeMapping, getChromosomeMappings, getCreationDate, getDescription, getDisplayName, getFlankingTargetSequenceAsString, getId, getLength, getLoadedMappings, getLoadedMappings, getModificationDate, getPaddedFlankingTargetSequenceAsString, getRNASequence, getRNASequenceAsString, getRNASequenceAsString, getSequence, getSequenceAsString, getSequenceAsString, getStatus, getTargetSequence, getTopLevelMappings, getTopLevelTargetCoordinates, getTopLevelTargetSequence, getVersion, inititializeTopLevel, isCurrent, isInitialized, isObjectTypeMapped, setCurrent, setDescription, setDisplayName, setInitialized, setLength, setStatus

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject

getAssembly, getComparaDivision, getComparaFactory, getComparaFactory, getDaoFactory, getSpecies, getStableID, setCreationDate, setDBVersion, setModificationDate, setSpecies, setStableID, setVersion

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

getDBVersion, getHashID, getRegistry, getSchemaVersion, isLazyloadAllowed, setDaoFactory, setId, setLazyloadAllowed, setRegistry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getSchemaVersion, getType, setId

Constructor Detail

DAAnalyzedFeature

public DAAnalyzedFeature()

DAAnalyzedFeature

public DAAnalyzedFeature(DAOCoreFactory factory)

Method Detail

getAnalysisID

public Integer getAnalysisID()

Specified by:

getAnalysisID in interface Analyzed

setAnalysisID

public void setAnalysisID(Integer analysisID)

Specified by:

setAnalysisID in interface Analyzed

getAnalysis

public DAAnalysis getAnalysis()

Specified by:

getAnalysis in interface Analyzed