uk.ac.roslin.ensembl.dao.database.factory

Class DBDAOSingleSpeciesVariationFactory

java.lang.Object

uk.ac.roslin.ensembl.dao.database.factory.DBDAOFactory

uk.ac.roslin.ensembl.dao.database.factory.DBDAOSpeciesFactory

uk.ac.roslin.ensembl.dao.database.factory.DBDAOSingleSpeciesFactory

uk.ac.roslin.ensembl.dao.database.factory.DBDAOSingleSpeciesVariationFactory

All Implemented Interfaces:

DAOFactory, DAOSingleSpeciesFactory, DAOSpeciesFactory, DAOVariationFactory

public class DBDAOSingleSpeciesVariationFactory
extends DBDAOSingleSpeciesFactory
implements DAOVariationFactory

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.dao.database.factory.DBDAOSingleSpeciesFactory

genus_species

Fields inherited from class uk.ac.roslin.ensembl.dao.database.factory.DBDAOSpeciesFactory

species

Fields inherited from class uk.ac.roslin.ensembl.dao.database.factory.DBDAOFactory

configuration, database, databaseName, databaseType, dBType, dbVersion, ensemblSchema, ibatisSchemaFilePath, mybatisSchemaFilePath, registry, schemaVersion, sqlSessionFactory, thisDBUrl

Constructor Summary

Constructors

Constructor and Description
DBDAOSingleSpeciesVariationFactory()
DBDAOSingleSpeciesVariationFactory(SingleSpeciesDatabase database)

Method Summary

Methods

Modifier and Type	Method and Description
void	addVariationXRef(XRef xref)
DBSingleSpeciesVariationDatabase	getDatabase()
org.apache.ibatis.session.SqlSession	getNewSqlSession()
DBVariationDAO	getVariationDAO()
DAVariationXRef	getVariationXRef(Integer id)
VariationType	getVarTypeBySetID(Integer setID)
VariationType	getVarTypeBySOTerm(String soTerm)

Methods inherited from class uk.ac.roslin.ensembl.dao.database.factory.DBDAOSingleSpeciesFactory

getGenus_Species, makeFactory, setGenus_Species

Methods inherited from class uk.ac.roslin.ensembl.dao.database.factory.DBDAOSpeciesFactory

getSpecies, setSpecies

Methods inherited from class uk.ac.roslin.ensembl.dao.database.factory.DBDAOFactory

getConfiguration, getDatabaseName, getDBType, getDBVersion, getEnsemblSchemaVersion, getMybatisSchemaFilePath, getRegistry, setDatabase, setDatabaseName, setDBType, setDBVersion, setEnsemblSchemaVersion, setMybatisSchemaFilePath

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.dao.factory.DAOSingleSpeciesFactory

getGenus_Species, setGenus_Species

Methods inherited from interface uk.ac.roslin.ensembl.dao.factory.DAOSpeciesFactory

getSpecies, setSpecies

Methods inherited from interface uk.ac.roslin.ensembl.dao.factory.DAOFactory

getConfiguration, getDatabaseName, getDBType, getDBVersion, getEnsemblSchemaVersion, getMybatisSchemaFilePath, getRegistry, setDatabaseName, setDBType, setDBVersion, setEnsemblSchemaVersion, setMybatisSchemaFilePath

Constructor Detail

DBDAOSingleSpeciesVariationFactory

public DBDAOSingleSpeciesVariationFactory()

DBDAOSingleSpeciesVariationFactory

public DBDAOSingleSpeciesVariationFactory(SingleSpeciesDatabase database)
                                   throws DAOException

Throws:

DAOException

Method Detail

getDatabase

public DBSingleSpeciesVariationDatabase getDatabase()

Specified by:

getDatabase in interface DAOFactory

Overrides:

getDatabase in class DBDAOSingleSpeciesFactory

getVariationDAO

public DBVariationDAO getVariationDAO()
                               throws DAOException

Specified by:

getVariationDAO in interface DAOVariationFactory

Throws:

DAOException

getVariationXRef

public DAVariationXRef getVariationXRef(Integer id)

Specified by:

getVariationXRef in interface DAOVariationFactory

addVariationXRef

public void addVariationXRef(XRef xref)

Specified by:

addVariationXRef in interface DAOVariationFactory

getVarTypeBySetID

public VariationType getVarTypeBySetID(Integer setID)

Specified by:

getVarTypeBySetID in interface DAOVariationFactory

getVarTypeBySOTerm

public VariationType getVarTypeBySOTerm(String soTerm)

Specified by:

getVarTypeBySOTerm in interface DAOVariationFactory

getNewSqlSession

public org.apache.ibatis.session.SqlSession getNewSqlSession()
                                                      throws DAOException

Specified by:

getNewSqlSession in interface DAOFactory

Overrides:

getNewSqlSession in class DBDAOFactory

Throws:

DAOException