uk.ac.roslin.ensembl.config

Class EnsemblCoordSystemType

java.lang.Object

uk.ac.roslin.ensembl.config.EnsemblType

uk.ac.roslin.ensembl.config.EnsemblCoordSystemType

All Implemented Interfaces:

Serializable, CoordSystemType, CoreObjectType, ObjectType

public class EnsemblCoordSystemType
extends EnsemblType
implements CoreObjectType, CoordSystemType

Author:

paterson

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static EnsemblCoordSystemType	chromosome
static EnsemblCoordSystemType	chunk
static EnsemblCoordSystemType	clone
static EnsemblCoordSystemType	contig
static String	defaultVersion
static EnsemblCoordSystemType	genescaffold
static EnsemblCoordSystemType	lrg
static EnsemblCoordSystemType	plasmid
static EnsemblCoordSystemType	plastid
static EnsemblCoordSystemType	scaffold
static String	sequenceLevel
static EnsemblCoordSystemType	supercontig
static EnsemblCoordSystemType	superscaffold
static EnsemblCoordSystemType	ultracontig
static EnsemblCoordSystemType	unknown

Fields inherited from class uk.ac.roslin.ensembl.config.EnsemblType

label

Method Summary

Methods

Modifier and Type	Method and Description
static EnsemblCoordSystemType	getType(String name)
String	toString() We often use the constants in a String context, so this routine allows us to do that easily

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

contig

public static EnsemblCoordSystemType contig

supercontig

public static EnsemblCoordSystemType supercontig

ultracontig

public static EnsemblCoordSystemType ultracontig

clone

public static EnsemblCoordSystemType clone

chromosome

public static EnsemblCoordSystemType chromosome

scaffold

public static EnsemblCoordSystemType scaffold

superscaffold

public static EnsemblCoordSystemType superscaffold

genescaffold

public static EnsemblCoordSystemType genescaffold

plasmid

public static EnsemblCoordSystemType plasmid

plastid

public static EnsemblCoordSystemType plastid

unknown

public static EnsemblCoordSystemType unknown

lrg

public static EnsemblCoordSystemType lrg

chunk

public static EnsemblCoordSystemType chunk

sequenceLevel

public static String sequenceLevel

defaultVersion

public static String defaultVersion

Method Detail

getType

public static EnsemblCoordSystemType getType(String name)

toString

public String toString()

Description copied from class: EnsemblType

We often use the constants in a String context, so this routine allows us to do that easily

Overrides:

toString in class EnsemblType

Returns:

The string 'label' of this object