uk.ac.roslin.ensembl.datasourceaware.core

Class DACoordinateSystem

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.core.DACoordinateSystem

All Implemented Interfaces:

Serializable, CoordinateSystem

public class DACoordinateSystem
extends Object
implements CoordinateSystem

Author:

paterson

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected Boolean	defaultVersion
protected Integer	id
protected Integer	rank
protected Boolean	sequenceLevel
protected Integer	speciesID
protected Boolean	topLevel
protected EnsemblCoordSystemType	type
protected String	version

Constructor Summary

Constructors

Constructor and Description
DACoordinateSystem()

Method Summary

Methods

Modifier and Type	Method and Description
Integer	getId() Get the value of id
Integer	getRank() Get the value of rank
Integer	getSpeciesID() Get the value of speciesID
EnsemblCoordSystemType	getType() Get the value of type
String	getVersion() Get the value of version
Boolean	isDefaultVersion()
Boolean	isSequenceLevel()
Boolean	isTopLevel() returns true if this CCS is the default version CS with lowest rank number i.e.
void	setDefaultVersion(Boolean defaultVersion)
void	setId(Integer id) Set the value of id
void	setRank(Integer rank) Set the value of rank
void	setSequenceLevel(Boolean sequenceLevel)
void	setSpeciesID(Integer speciesID) Set the value of speciesID
void	setTopLevel(boolean toplevel)
void	setType(CoordSystemType type) Set the value of type
void	setVersion(String version) Set the value of version

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

id

protected Integer id

speciesID

protected Integer speciesID

type

protected EnsemblCoordSystemType type

rank

protected Integer rank

version

protected String version

defaultVersion

protected Boolean defaultVersion

sequenceLevel

protected Boolean sequenceLevel

topLevel

protected Boolean topLevel

Constructor Detail

DACoordinateSystem

public DACoordinateSystem()

Method Detail

isTopLevel

public Boolean isTopLevel()

returns true if this CCS is the default version CS with lowest rank number i.e. 'toplevel' default CS is actually that with 'lowestrank'

Specified by:

isTopLevel in interface CoordinateSystem

Returns:

setTopLevel

public void setTopLevel(boolean toplevel)

getSpeciesID

public Integer getSpeciesID()

Get the value of speciesID

Specified by:

getSpeciesID in interface CoordinateSystem

Returns:

the value of speciesID

setSpeciesID

public void setSpeciesID(Integer speciesID)

Set the value of speciesID

Specified by:

setSpeciesID in interface CoordinateSystem

Parameters:

speciesID - new value of speciesID

getId

public Integer getId()

Get the value of id

Specified by:

getId in interface CoordinateSystem

Returns:

the value of id

setId

public void setId(Integer id)

Set the value of id

Specified by:

setId in interface CoordinateSystem

Parameters:

id - new value of id

getType

public EnsemblCoordSystemType getType()

Get the value of type

Specified by:

getType in interface CoordinateSystem

Returns:

the value of type

setType

public void setType(CoordSystemType type)

Set the value of type

Specified by:

setType in interface CoordinateSystem

Parameters:

type - new value of type

getVersion

public String getVersion()

Get the value of version

Specified by:

getVersion in interface CoordinateSystem

Returns:

the value of version

setVersion

public void setVersion(String version)

Set the value of version

Specified by:

setVersion in interface CoordinateSystem

Parameters:

version - new value of version

getRank

public Integer getRank()

Get the value of rank

Specified by:

getRank in interface CoordinateSystem

Returns:

the value of rank

setRank

public void setRank(Integer rank)

Set the value of rank

Specified by:

setRank in interface CoordinateSystem

Parameters:

rank - new value of rank

isDefaultVersion

public Boolean isDefaultVersion()

Specified by:

isDefaultVersion in interface CoordinateSystem

setDefaultVersion

public void setDefaultVersion(Boolean defaultVersion)

Specified by:

setDefaultVersion in interface CoordinateSystem

isSequenceLevel

public Boolean isSequenceLevel()

Specified by:

isSequenceLevel in interface CoordinateSystem

setSequenceLevel

public void setSequenceLevel(Boolean sequenceLevel)

Specified by:

setSequenceLevel in interface CoordinateSystem