Uses of Class
uk.ac.roslin.ensembl.datasourceaware.core.DACoordinateSystem

Packages that use DACoordinateSystem

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.mapper.core

Uses of DACoordinateSystem in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database that return DACoordinateSystem

Modifier and Type	Method and Description
DACoordinateSystem	DBCollectionCoreDatabase.getBuildCoordSystem(Species species, String featureType)
DACoordinateSystem	DBSingleSpeciesCoreDatabase.getBuildCoordSystem(String featureType)
DACoordinateSystem	DBSingleSpeciesCoreDatabase.getChromosomeLevelCoordSystem()
DACoordinateSystem	DBCollectionCoreDatabase.getChromosomeLevelCS(Species species)
DACoordinateSystem	DBSingleSpeciesCoreDatabase.getCSByID(Integer id)
DACoordinateSystem	DBCollectionCoreDatabase.getCSByID(Species species, Integer id)
DACoordinateSystem	DBSingleSpeciesCoreDatabase.getSequenceLevelCoordSystem()
DACoordinateSystem	DBCollectionCoreDatabase.getSequenceLevelCS(Species species)
DACoordinateSystem	DBSingleSpeciesCoreDatabase.getTopLevelCoordSystem()
DACoordinateSystem	DBCollectionCoreDatabase.getTopLevelCS(Species species)

Methods in uk.ac.roslin.ensembl.dao.database that return types with arguments of type DACoordinateSystem

Modifier and Type	Method and Description
List<DACoordinateSystem>	DBSingleSpeciesCoreDatabase.getCoordinateSystems()
Set<DACoordinateSystem>	DBSingleSpeciesVariationDatabase.getCSForFeature(ObjectType featureType)
Set<DACoordinateSystem>	DBSingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
Set<DACoordinateSystem>	DBCollectionCoreDatabase.getCSForFeature(Species sp, ObjectType feature)

Uses of DACoordinateSystem in uk.ac.roslin.ensembl.dao.database.coreaccess

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess that return types with arguments of type DACoordinateSystem

Modifier and Type	Method and Description
List<DACoordinateSystem>	DBCoordinateSystemDAO.getCoordinateSystems()

Uses of DACoordinateSystem in uk.ac.roslin.ensembl.mapper.core

Methods in uk.ac.roslin.ensembl.mapper.core that return types with arguments of type DACoordinateSystem

Modifier and Type	Method and Description
List<DACoordinateSystem>	SpeciesMapper.getCoordSystems(HashMap map)