uk.ac.roslin.ensembl.datasourceaware

Class DAXRef

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.DAObject

uk.ac.roslin.ensembl.datasourceaware.DAXRef

All Implemented Interfaces:

Serializable, IdentifiableObject, XRef

Direct Known Subclasses:

DAVariationXRef

public class DAXRef
extends DAObject
implements XRef

Author:

tpaterso

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

DAObject.DAComparator

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	initialized
protected String	version

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

daComparator, daoFactory, dbVersion, id, registry, schemaVersion

Constructor Summary

Constructors

Constructor and Description
DAXRef()

Method Summary

Methods

Modifier and Type	Method and Description
DAOCoreFactory	getDaoFactory()
ExternalDB	getDB()
String	getDBDisplayName()
String	getDescription()
String	getDisplayID()
Evidence	getEvidence()
String	getInfo()
String	getInfoType()
String	getPrimaryAccession()
TreeSet<String>	getSynonyms()
ObjectType	getType()
String	getVersion()
boolean	isInitialized()
void	setDB(ExternalDB dB)
void	setDescription(String description)
void	setDisplayID(String displayID)
void	setEvidence(Evidence evidence)
void	setInfo(String info)
void	setInfoType(String infoType)
void	setInitialized(boolean init)
void	setPrimaryAccession(String primaryAccession)
void	setVersion(String version)

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

getDBVersion, getHashID, getId, getRegistry, getSchemaVersion, isLazyloadAllowed, setDaoFactory, setId, setLazyloadAllowed, setRegistry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, setId

Field Detail

version

protected String version

initialized

protected boolean initialized

Constructor Detail

DAXRef

public DAXRef()

Method Detail

getDaoFactory

public DAOCoreFactory getDaoFactory()

Overrides:

getDaoFactory in class DAObject

getDB

public ExternalDB getDB()

Specified by:

getDB in interface XRef

setDB

public void setDB(ExternalDB dB)

getDescription

public String getDescription()

Specified by:

getDescription in interface XRef

setDescription

public void setDescription(String description)

getDisplayID

public String getDisplayID()

Specified by:

getDisplayID in interface XRef

setDisplayID

public void setDisplayID(String displayID)

getInfo

public String getInfo()

Specified by:

getInfo in interface XRef

setInfo

public void setInfo(String info)

getInfoType

public String getInfoType()

Specified by:

getInfoType in interface XRef

setInfoType

public void setInfoType(String infoType)

getVersion

public String getVersion()

Specified by:

getVersion in interface XRef

setVersion

public void setVersion(String version)

getDBDisplayName

public String getDBDisplayName()

Specified by:

getDBDisplayName in interface XRef

getType

public ObjectType getType()

Specified by:

getType in interface IdentifiableObject

getPrimaryAccession

public String getPrimaryAccession()

Specified by:

getPrimaryAccession in interface XRef

setPrimaryAccession

public void setPrimaryAccession(String primaryAccession)

isInitialized

public boolean isInitialized()

setInitialized

public void setInitialized(boolean init)

getSynonyms

public TreeSet<String> getSynonyms()

Specified by:

getSynonyms in interface XRef

getEvidence

public Evidence getEvidence()

Specified by:

getEvidence in interface XRef

setEvidence

public void setEvidence(Evidence evidence)