Uses of Class
uk.ac.roslin.ensembl.datasourceaware.DAXRef

Packages that use DAXRef

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.datasourceaware.variation
uk.ac.roslin.ensembl.mapper

Uses of DAXRef in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database that return types with arguments of type DAXRef

Modifier and Type	Method and Description
List<DAXRef>	DBXRefDAO.getAllXRefs(IdentifiableObject feature)

Uses of DAXRef in uk.ac.roslin.ensembl.datasourceaware.core

Fields in uk.ac.roslin.ensembl.datasourceaware.core declared as DAXRef

Modifier and Type	Field and Description
protected DAXRef	DAFeature.displayXRef

Fields in uk.ac.roslin.ensembl.datasourceaware.core with type parameters of type DAXRef

Modifier and Type	Field and Description
protected HashMap<ExternalDBType,Set<DAXRef>>	DATranslation.typedXRefs
protected HashMap<ExternalDBType,Set<DAXRef>>	DATranscript.typedXRefs
protected HashMap<ExternalDBType,Set<DAXRef>>	DAGene.typedXRefs
protected Set<DAXRef>	DATranslation.xrefs
protected Set<DAXRef>	DATranscript.xrefs
protected Set<DAXRef>	DAGene.xrefs

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return DAXRef

Modifier and Type	Method and Description
DAXRef	DATranscript.getDisplayXRef() Triggers lazyload if Transcript is not initialized.
DAXRef	DAGene.getDisplayXRef()

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return types with arguments of type DAXRef

Modifier and Type	Method and Description
Set<DAXRef>	DATranslation.getAllXRefs()
Set<DAXRef>	DATranscript.getAllXRefs()
Set<DAXRef>	DAGene.getAllXRefs()
Set<DAXRef>	DATranscript.getCCDSXRefs()
Set<DAXRef>	DATranslation.getVegaXRefs()
Set<DAXRef>	DATranscript.getVegaXRefs()
Set<DAXRef>	DAGene.getVegaXRefs()
protected Set<DAXRef>	DATranslation.getXRefs(ExternalDBType type) Returns preloaded XRefs of given type: Note - does not lazy load these.
protected Set<DAXRef>	DATranscript.getXRefs(ExternalDBType type) Beware: this method does not trigger lazyloading of typed XRefs.
protected Set<DAXRef>	DAGene.getXRefs(ExternalDBType type) Returns preloaded XRefs of given type: Note - does not lazy load these

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type DAXRef

Modifier and Type	Method and Description
void	DATranscript.setDisplayXRef(DAXRef xref)
void	DAGene.setDisplayXRef(DAXRef xref)

Uses of DAXRef in uk.ac.roslin.ensembl.datasourceaware.variation

Subclasses of DAXRef in uk.ac.roslin.ensembl.datasourceaware.variation

Modifier and Type	Class and Description
class	DAVariationXRef

Uses of DAXRef in uk.ac.roslin.ensembl.mapper

Methods in uk.ac.roslin.ensembl.mapper that return DAXRef

Modifier and Type	Method and Description
DAXRef	XRefMapper.reInitialize(FeatureQuery query)

Methods in uk.ac.roslin.ensembl.mapper that return types with arguments of type DAXRef

Modifier and Type	Method and Description
List<DAXRef>	XRefMapper.getXRefs(FeatureQuery query)