uk.ac.roslin.ensembl.datasourceaware.core

Class DAProteinFeature

java.lang.Object

uk.ac.roslin.ensembl.datasourceaware.DAObject

uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject

uk.ac.roslin.ensembl.datasourceaware.core.DAProteinFeature

All Implemented Interfaces:

Serializable, Analyzed, CoreObject, ProteinFeature, IdentifiableObject, StableID

public class DAProteinFeature
extends DACoreObject
implements ProteinFeature

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

DAObject.DAComparator

Field Summary

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject

comparaFactories, creationDate, modificationDate, species, stableID, version

Fields inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

daComparator, daoFactory, dbVersion, id, registry, schemaVersion

Constructor Summary

Constructors

Constructor and Description
DAProteinFeature()
DAProteinFeature(DAOCoreFactory factory)

Method Summary

Methods

Modifier and Type	Method and Description
Analysis	getAnalysis()
Integer	getAnalysisID()
Double	getEValue()
Double	getPercentIdentity()
Double	getScore()
int	getSourceEnd()
int	getSourceStart()
int	getTargetEnd()
String	getTargetName()
int	getTargetStart()
int	getTranslationID()
ObjectType	getType()
void	setAnalysisID(Integer analysisID)
void	setEValue(Double eValue)
void	setPercentIdentity(Double percentIdentity)
void	setScore(Double score)
void	setSourceEnd(int sourceEnd)
void	setSourceStart(int sourceStart)
void	setTargetEnd(int targetEnd)
void	setTargetName(String targetName)
void	setTargetStart(int targetStart)
void	setTranslationID(int translationID)

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.core.DACoreObject

getAssembly, getComparaDivision, getComparaFactory, getComparaFactory, getCreationDate, getDaoFactory, getModificationDate, getSpecies, getStableID, getVersion, setCreationDate, setDBVersion, setModificationDate, setSpecies, setStableID, setVersion

Methods inherited from class uk.ac.roslin.ensembl.datasourceaware.DAObject

getDBVersion, getHashID, getId, getRegistry, getSchemaVersion, isLazyloadAllowed, setDaoFactory, setId, setLazyloadAllowed, setRegistry

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface uk.ac.roslin.ensembl.model.IdentifiableObject

getDBVersion, getHashID, getId, getSchemaVersion, setId

Constructor Detail

DAProteinFeature

public DAProteinFeature()

DAProteinFeature

public DAProteinFeature(DAOCoreFactory factory)

Method Detail

getAnalysisID

public Integer getAnalysisID()

Specified by:

getAnalysisID in interface Analyzed

setAnalysisID

public void setAnalysisID(Integer analysisID)

Specified by:

setAnalysisID in interface Analyzed

getAnalysis

public Analysis getAnalysis()

Specified by:

getAnalysis in interface Analyzed

getEValue

public Double getEValue()

Specified by:

getEValue in interface ProteinFeature

setEValue

public void setEValue(Double eValue)

Specified by:

setEValue in interface ProteinFeature

getPercentIdentity

public Double getPercentIdentity()

Specified by:

getPercentIdentity in interface ProteinFeature

setPercentIdentity

public void setPercentIdentity(Double percentIdentity)

Specified by:

setPercentIdentity in interface ProteinFeature

getScore

public Double getScore()

Specified by:

getScore in interface ProteinFeature

setScore

public void setScore(Double score)

Specified by:

setScore in interface ProteinFeature

getSourceEnd

public int getSourceEnd()

Specified by:

getSourceEnd in interface ProteinFeature

setSourceEnd

public void setSourceEnd(int sourceEnd)

Specified by:

setSourceEnd in interface ProteinFeature

getSourceStart

public int getSourceStart()

Specified by:

getSourceStart in interface ProteinFeature

setSourceStart

public void setSourceStart(int sourceStart)

Specified by:

setSourceStart in interface ProteinFeature

getTargetEnd

public int getTargetEnd()

Specified by:

getTargetEnd in interface ProteinFeature

setTargetEnd

public void setTargetEnd(int targetEnd)

Specified by:

setTargetEnd in interface ProteinFeature

getTargetName

public String getTargetName()

Specified by:

getTargetName in interface ProteinFeature

setTargetName

public void setTargetName(String targetName)

Specified by:

setTargetName in interface ProteinFeature

getTargetStart

public int getTargetStart()

Specified by:

getTargetStart in interface ProteinFeature

setTargetStart

public void setTargetStart(int targetStart)

Specified by:

setTargetStart in interface ProteinFeature

getTranslationID

public int getTranslationID()

Specified by:

getTranslationID in interface ProteinFeature

setTranslationID

public void setTranslationID(int translationID)

Specified by:

setTranslationID in interface ProteinFeature

getType

public ObjectType getType()

Specified by:

getType in interface IdentifiableObject