uk.ac.roslin.ensembl.config

Class FeatureType

java.lang.Object

uk.ac.roslin.ensembl.config.EnsemblType

uk.ac.roslin.ensembl.config.FeatureType

All Implemented Interfaces:

Serializable, ObjectType

public class FeatureType
extends EnsemblType

Author:

tpaterso

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static FeatureType	assembly_exception
static FeatureType	compressed_genotype_single_bp
static FeatureType	density_feature
static FeatureType	ditag_feature
static FeatureType	dna_align_feature
static FeatureType	dna_peptide_align_feature
static FeatureType	exon
static FeatureType	flanking_sequence
static FeatureType	gene
static FeatureType	intron
static FeatureType	karyotype_band
static FeatureType	marker
static FeatureType	marker_feature
static FeatureType	misc_feature
static FeatureType	peptide_dna_align_feature
static FeatureType	prediction_exon
static FeatureType	prediction_transcript
static FeatureType	protein_align_feature
static FeatureType	protein_feature
static FeatureType	qtl_feature
static FeatureType	read_coverage
static FeatureType	repeat_feature
static FeatureType	simple_feature
static FeatureType	splicing_event
static FeatureType	structural_variation
static FeatureType	transcript
static FeatureType	transcript_variation
static FeatureType	variation

Fields inherited from class uk.ac.roslin.ensembl.config.EnsemblType

label

Method Summary

Methods

Modifier and Type	Method and Description
static Collection<FeatureType>	getAllTypes()
static FeatureType	getFeatureType(String value)

Methods inherited from class uk.ac.roslin.ensembl.config.EnsemblType

toString

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

exon

public static FeatureType exon

gene

public static FeatureType gene

repeat_feature

public static FeatureType repeat_feature

simple_feature

public static FeatureType simple_feature

prediction_exon

public static FeatureType prediction_exon

prediction_transcript

public static FeatureType prediction_transcript

transcript

public static FeatureType transcript

dna_align_feature

public static FeatureType dna_align_feature

protein_align_feature

public static FeatureType protein_align_feature

marker

public static FeatureType marker

assembly_exception

public static FeatureType assembly_exception

density_feature

public static FeatureType density_feature

ditag_feature

public static FeatureType ditag_feature

intron

public static FeatureType intron

karyotype_band

public static FeatureType karyotype_band

marker_feature

public static FeatureType marker_feature

misc_feature

public static FeatureType misc_feature

qtl_feature

public static FeatureType qtl_feature

splicing_event

public static FeatureType splicing_event

protein_feature

public static FeatureType protein_feature

dna_peptide_align_feature

public static FeatureType dna_peptide_align_feature

peptide_dna_align_feature

public static FeatureType peptide_dna_align_feature

variation

public static FeatureType variation

transcript_variation

public static FeatureType transcript_variation

structural_variation

public static FeatureType structural_variation

flanking_sequence

public static FeatureType flanking_sequence

read_coverage

public static FeatureType read_coverage

compressed_genotype_single_bp

public static FeatureType compressed_genotype_single_bp

Method Detail

getAllTypes

public static Collection<FeatureType> getAllTypes()

getFeatureType

public static FeatureType getFeatureType(String value)