Uses of Interface
uk.ac.roslin.ensembl.model.IdentifiableObject

Packages that use IdentifiableObject

Package	Description
uk.ac.roslin.ensembl.dao
uk.ac.roslin.ensembl.dao.coreaccess
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.datasourceaware
uk.ac.roslin.ensembl.datasourceaware.compara
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.datasourceaware.variation
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.compara
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.relationship
uk.ac.roslin.ensembl.model.variation

Uses of IdentifiableObject in uk.ac.roslin.ensembl.dao

Methods in uk.ac.roslin.ensembl.dao with parameters of type IdentifiableObject

Modifier and Type	Method and Description
List<? extends XRef>	XRefDAO.getAllXRefs(IdentifiableObject feature)

Uses of IdentifiableObject in uk.ac.roslin.ensembl.dao.coreaccess

Methods in uk.ac.roslin.ensembl.dao.coreaccess with parameters of type IdentifiableObject

Modifier and Type	Method and Description
void	ReInitializationDAO.reInitialize(IdentifiableObject object)

Uses of IdentifiableObject in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database with parameters of type IdentifiableObject

Modifier and Type	Method and Description
List<DAXRef>	DBXRefDAO.getAllXRefs(IdentifiableObject feature)
void	DBXRefDAO.reInitialize(IdentifiableObject xref) Uses the xref_id of an xref to fill in missing data that would have been present if the the xref had initially been made by a call to getXRefs on the identifiable object.

Uses of IdentifiableObject in uk.ac.roslin.ensembl.dao.database.coreaccess

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess with parameters of type IdentifiableObject

Modifier and Type	Method and Description
void	DBTranslationDAO.reInitialize(IdentifiableObject object)
void	DBTranscriptDAO.reInitialize(IdentifiableObject object) Uses the stableid of an object to fill in missing data
void	DBGeneDAO.reInitialize(IdentifiableObject object) Uses the stableid of an object to fill in missing data that would have been present if the the gene had intially been made by a call to getGeneByStableID or getGeneByID.
void	DBExonDAO.reInitialize(IdentifiableObject object) Uses the stableid of an object to fill in missing data

Uses of IdentifiableObject in uk.ac.roslin.ensembl.datasourceaware

Classes in uk.ac.roslin.ensembl.datasourceaware that implement IdentifiableObject

Modifier and Type	Class and Description
class	DAAnalysis
class	DAObject
class	DAXRef

Uses of IdentifiableObject in uk.ac.roslin.ensembl.datasourceaware.compara

Classes in uk.ac.roslin.ensembl.datasourceaware.compara that implement IdentifiableObject

Modifier and Type	Class and Description
class	DAHomologyPairRelationship
class	DAHomologyRelationship
class	InverseHomologyPairRelationshipView

Uses of IdentifiableObject in uk.ac.roslin.ensembl.datasourceaware.core

Classes in uk.ac.roslin.ensembl.datasourceaware.core that implement IdentifiableObject

Modifier and Type	Class and Description
class	DAAnalyzedFeature
class	DAAssembledDNASequence
class	DAChromosome A DAChromosome is a particular type of DAAssembledDNASequence for representing whole chromosomes.
class	DACoreObject
class	DADNASequence
class	DAExon
class	DAFeature
class	DAGene
class	DAProteinFeature
class	DATranscript
class	DATranslation
class	GapSequence

Uses of IdentifiableObject in uk.ac.roslin.ensembl.datasourceaware.variation

Classes in uk.ac.roslin.ensembl.datasourceaware.variation that implement IdentifiableObject

Modifier and Type	Class and Description
class	DAVariation
class	DAVariationXRef

Uses of IdentifiableObject in uk.ac.roslin.ensembl.model

Subinterfaces of IdentifiableObject in uk.ac.roslin.ensembl.model

Modifier and Type	Interface and Description
interface	MappableObject
interface	XRef
interface	XRefed

Uses of IdentifiableObject in uk.ac.roslin.ensembl.model.compara

Subinterfaces of IdentifiableObject in uk.ac.roslin.ensembl.model.compara

Modifier and Type	Interface and Description
interface	HomologyPairRelationship<CLAZZ extends Gene> extends HomologyRelationship for those Relationships that are binary
interface	HomologyRelationship<CLAZZ extends Gene> Ensembl schema and PerlAPI claims that homology relationships are not necessarily only binary, i.e. the could have more than two members.

Uses of IdentifiableObject in uk.ac.roslin.ensembl.model.core

Subinterfaces of IdentifiableObject in uk.ac.roslin.ensembl.model.core

Modifier and Type	Interface and Description
interface	AssembledDNASequence
interface	Chromosome
interface	CoreObject
interface	DNASequence
interface	Exon
interface	Feature
interface	Gene
interface	Transcript
interface	Translation

Uses of IdentifiableObject in uk.ac.roslin.ensembl.model.relationship

Classes in uk.ac.roslin.ensembl.model.relationship with type parameters of type IdentifiableObject

Modifier and Type	Interface and Description
interface	BinaryRelationship<CLAZZ extends IdentifiableObject>
interface	GroupRelationship<CLAZZ extends IdentifiableObject>
interface	InverseBinaryRelationshipView<CLAZZ extends BinaryRelationship<? extends IdentifiableObject>>

Subinterfaces of IdentifiableObject in uk.ac.roslin.ensembl.model.relationship

Modifier and Type	Interface and Description
interface	BinaryRelationship<CLAZZ extends IdentifiableObject>
interface	GroupRelationship<CLAZZ extends IdentifiableObject>

Methods in uk.ac.roslin.ensembl.model.relationship that return IdentifiableObject

Modifier and Type	Method and Description
IdentifiableObject	InverseBinaryRelationshipView.getSource() Returns the source Attributable in the relationship
IdentifiableObject	BinaryRelationship.getSource() Returns the source Attributable in the relationship
IdentifiableObject	InverseBinaryRelationshipView.getTarget() Returns the target IdentifiableObject in the relationship
IdentifiableObject	BinaryRelationship.getTarget() Returns the target IdentifiableObject in the relationship

Uses of IdentifiableObject in uk.ac.roslin.ensembl.model.variation

Subinterfaces of IdentifiableObject in uk.ac.roslin.ensembl.model.variation

Modifier and Type	Interface and Description
interface	Variation