Uses of Interface
uk.ac.roslin.ensembl.model.ObjectType

Packages that use ObjectType

Package	Description
uk.ac.roslin.ensembl.config
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.datasourceaware
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.datasourceaware.variation
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.compara
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.database
uk.ac.roslin.ensembl.model.relationship
uk.ac.roslin.ensembl.model.variation

Uses of ObjectType in uk.ac.roslin.ensembl.config

Classes in uk.ac.roslin.ensembl.config that implement ObjectType

Modifier and Type	Class and Description
class	AssemblyExceptionType
class	CodonTable
class	EnsemblComparaDivision In 'ensembl.org' there is a single 'ensembl_compara' database which contains the pairwise comparison data on all the species in 'ensembl.org.
class	EnsemblCoordSystemType
class	EnsemblCoreObjectType
class	EnsemblDBType Concrete implementation of DatabaseType interface for representing static Ensembl DatabaseTypes.
class	EnsemblType
class	ExternalDBType
class	FeatureType

Uses of ObjectType in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database with parameters of type ObjectType

Modifier and Type	Method and Description
Set<DACoordinateSystem>	DBSingleSpeciesVariationDatabase.getCSForFeature(ObjectType featureType)
Set<DACoordinateSystem>	DBSingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
Set<DACoordinateSystem>	DBCollectionCoreDatabase.getCSForFeature(Species sp, ObjectType feature)
Integer	DBSingleSpeciesVariationDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
Integer	DBSingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
Integer	DBCollectionCoreDatabase.getMaxLengthForFeature(Species sp, ObjectType feature, CoordinateSystem cs)

Uses of ObjectType in uk.ac.roslin.ensembl.datasourceaware

Methods in uk.ac.roslin.ensembl.datasourceaware that return ObjectType

Modifier and Type	Method and Description
ObjectType	DAXRef.getType()
ObjectType	DAAnalysis.getType()

Uses of ObjectType in uk.ac.roslin.ensembl.datasourceaware.core

Fields in uk.ac.roslin.ensembl.datasourceaware.core with type parameters of type ObjectType

Modifier and Type	Field and Description
protected Set<ObjectType>	DAFeature.mappedObjectTypes
protected HashMap<ObjectType,CoordinateSet>	DADNASequence.mappedRegions
protected HashMap<ObjectType,MappingSet>	DAFeature.objectTypeMappings
protected HashMap<ObjectType,MappingSet>	DADNASequence.objectTypeMappings

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return ObjectType

Modifier and Type	Method and Description
ObjectType	DATranslation.getType()
ObjectType	DATranscript.getType()
ObjectType	DAProteinFeature.getType()
ObjectType	DAGene.getType()
ObjectType	DAExon.getType()
ObjectType	DADNASequence.getType()
ObjectType	DAChromosome.getType()

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return types with arguments of type ObjectType

Modifier and Type	Method and Description
HashMap<ObjectType,CoordinateSet>	DADNASequence.getMappedRegions()
HashMap<ObjectType,MappingSet>	DADNASequence.getObjectTypeMappings()

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type ObjectType

Modifier and Type	Method and Description
void	DAFeature.addMappedObjectType(ObjectType mappedType)
MappingSet	DAFeature.getLoadedMappings(ObjectType targetType)
MappingSet	DADNASequence.getLoadedMappings(ObjectType targetType)
Boolean	DAFeature.isObjectTypeMapped(ObjectType mappedType)

Uses of ObjectType in uk.ac.roslin.ensembl.datasourceaware.variation

Fields in uk.ac.roslin.ensembl.datasourceaware.variation with type parameters of type ObjectType

Modifier and Type	Field and Description
protected Set<ObjectType>	DAVariation.mappedObjectTypes
protected HashMap<ObjectType,MappingSet>	DAVariation.objectTypeMappings

Methods in uk.ac.roslin.ensembl.datasourceaware.variation with parameters of type ObjectType

Modifier and Type	Method and Description
void	DAVariation.addMappedObjectType(ObjectType mappedType)
MappingSet	DAVariation.getLoadedMappings(ObjectType targetType)
Boolean	DAVariation.isObjectTypeMapped(ObjectType mappedType)

Uses of ObjectType in uk.ac.roslin.ensembl.model

Methods in uk.ac.roslin.ensembl.model that return ObjectType

Modifier and Type	Method and Description
ObjectType	Mapping.getSourceType()
ObjectType	Mapping.getTargetType()
ObjectType	IdentifiableObject.getType()
ObjectType	ExternalDB.getType()

Methods in uk.ac.roslin.ensembl.model with parameters of type ObjectType

Modifier and Type	Method and Description
MappingSet	MappableObject.getLoadedMappings(ObjectType targetType)

Uses of ObjectType in uk.ac.roslin.ensembl.model.compara

Classes in uk.ac.roslin.ensembl.model.compara that implement ObjectType

Modifier and Type	Class and Description
class	HomologyType

Uses of ObjectType in uk.ac.roslin.ensembl.model.core

Subinterfaces of ObjectType in uk.ac.roslin.ensembl.model.core

Modifier and Type	Interface and Description
interface	CoordSystemType
interface	CoreObjectType

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type ObjectType

Modifier and Type	Method and Description
HashMap<ObjectType,CoordinateSet>	DNASequence.getMappedRegions()
HashMap<ObjectType,? extends MappingSet>	DNASequence.getObjectTypeMappings()

Methods in uk.ac.roslin.ensembl.model.core with parameters of type ObjectType

Modifier and Type	Method and Description
void	Feature.addMappedObjectType(ObjectType mappedType)
Boolean	Feature.isObjectTypeMapped(ObjectType mappedType)

Uses of ObjectType in uk.ac.roslin.ensembl.model.database

Subinterfaces of ObjectType in uk.ac.roslin.ensembl.model.database

Modifier and Type	Interface and Description
interface	DatabaseType Interface for representing static DatabaseTypes

Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type ObjectType

Modifier and Type	Method and Description
List<? extends ObjectType>	SingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
List<? extends ObjectType>	CollectionCoreDatabase.getFeaturesForCS(Species sp, CoordinateSystem coordSys)

Methods in uk.ac.roslin.ensembl.model.database with parameters of type ObjectType

Modifier and Type	Method and Description
Set<? extends CoordinateSystem>	SingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
Set<? extends CoordinateSystem>	CollectionCoreDatabase.getCSForFeature(Species sp, ObjectType feature)
Integer	SingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
Integer	CollectionCoreDatabase.getMaxLengthForFeature(Species sp, ObjectType feature, CoordinateSystem cs)

Uses of ObjectType in uk.ac.roslin.ensembl.model.relationship

Classes in uk.ac.roslin.ensembl.model.relationship that implement ObjectType

Modifier and Type	Class and Description
class	RelationshipType

Uses of ObjectType in uk.ac.roslin.ensembl.model.variation

Classes in uk.ac.roslin.ensembl.model.variation that implement ObjectType

Modifier and Type	Class and Description
class	VariationType