Uses of Package
uk.ac.roslin.ensembl.model

Packages that use uk.ac.roslin.ensembl.model

Package	Description
uk.ac.roslin.ensembl.config
uk.ac.roslin.ensembl.dao
uk.ac.roslin.ensembl.dao.compara
uk.ac.roslin.ensembl.dao.coreaccess
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.compara
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.dao.database.factory
uk.ac.roslin.ensembl.dao.database.variation
uk.ac.roslin.ensembl.dao.factory
uk.ac.roslin.ensembl.dao.variation
uk.ac.roslin.ensembl.datasourceaware
uk.ac.roslin.ensembl.datasourceaware.compara
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.datasourceaware.variation
uk.ac.roslin.ensembl.mapper
uk.ac.roslin.ensembl.mapper.core
uk.ac.roslin.ensembl.mapper.handler
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.compara
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.database
uk.ac.roslin.ensembl.model.relationship
uk.ac.roslin.ensembl.model.variation

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.config

Class and Description
GoEvidence
ObjectType

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao

Class and Description
IdentifiableObject
XRef
XRefed

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.compara

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.coreaccess

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
IdentifiableObject
Mapping Used to be abstract
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.database

Class and Description
ExternalDB
IdentifiableObject
ObjectType
XRef
XRefed

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.database.compara

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.database.coreaccess

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
IdentifiableObject
Mapping Used to be abstract
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.database.factory

Class and Description
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.database.variation

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.factory

Class and Description
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.dao.variation

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
Mapping Used to be abstract

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.datasourceaware

Class and Description
Evidence
ExternalDB
IdentifiableObject
ObjectType
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.datasourceaware.compara

Class and Description
IdentifiableObject

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.datasourceaware.core

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
Coordinate.Strand Public enumeration of the two alternate Strands, FORWARD and REVERSE.
CoordinateSet Extension of a TreeSet for holding COordinates ordered using their Comparator which orders Coordinate objects by the plus strand start, or the plus strand end if the starts are identical.
IdentifiableObject
MappableObject
Mapping Used to be abstract
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {
ObjectType
StableID
XRef
XRefed

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.datasourceaware.variation

Class and Description
IdentifiableObject
MappableObject
Mapping Used to be abstract
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {
ObjectType
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.mapper

Class and Description
ExternalDB
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.mapper.core

Class and Description
Mapping Used to be abstract

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.mapper.handler

Class and Description
GoEvidence

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.model

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
Coordinate.Strand Public enumeration of the two alternate Strands, FORWARD and REVERSE.
CoordinateSet Extension of a TreeSet for holding COordinates ordered using their Comparator which orders Coordinate objects by the plus strand start, or the plus strand end if the starts are identical.
Evidence
ExternalDB
IdentifiableObject
MappableObject
Mapping Used to be abstract
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {
ObjectType
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.model.compara

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
IdentifiableObject
ObjectType

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.model.core

Class and Description
Coordinate In general a Coordinate must have a non-null non-zero value for both start and end.
Coordinate.Strand Public enumeration of the two alternate Strands, FORWARD and REVERSE.
CoordinateSet Extension of a TreeSet for holding COordinates ordered using their Comparator which orders Coordinate objects by the plus strand start, or the plus strand end if the starts are identical.
IdentifiableObject
MappableObject
Mapping Used to be abstract
MappingSet Used to be abstract with signature public abstract class MappingSet<CLAZZ extends Mapping> extends TreeSet<CLAZZ> implements Serializable {
ObjectType
XRef

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.model.database

Class and Description
ExternalDB
ObjectType

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.model.relationship

Class and Description
IdentifiableObject
ObjectType

Classes in uk.ac.roslin.ensembl.model used by uk.ac.roslin.ensembl.model.variation

Class and Description
IdentifiableObject
MappableObject
ObjectType
XRef