Uses of Class
uk.ac.roslin.ensembl.model.CoordinateSet

Packages that use CoordinateSet

Package	Description
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.core

Uses of CoordinateSet in uk.ac.roslin.ensembl.datasourceaware.core

Fields in uk.ac.roslin.ensembl.datasourceaware.core with type parameters of type CoordinateSet

Modifier and Type	Field and Description
protected HashMap<ObjectType,CoordinateSet>	DADNASequence.mappedRegions

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return types with arguments of type CoordinateSet

Modifier and Type	Method and Description
HashMap<ObjectType,CoordinateSet>	DADNASequence.getMappedRegions()

Uses of CoordinateSet in uk.ac.roslin.ensembl.model

Methods in uk.ac.roslin.ensembl.model that return CoordinateSet

Modifier and Type	Method and Description
CoordinateSet	CoordinateSet.getGaps() Returns a CoordinateSet containing Coordinates for all of the gaps in this CoordinateSet.
CoordinateSet	MappingSet.getSourceCoordinates() Returns a CoordinateSet containing all of the Source Coordinates of Mappings in this MappingSet.
CoordinateSet	MappingSet.getTargetCoordinates() Returns a CoordinateSet containing all of the Target Coordinates of Mappings in this MappingSet.
CoordinateSet	CoordinateSet.getUncoveredRegions(Coordinate test) Returns the CoordinateSet (ordered set of Coordinates) that define regions of the test Coordinate not represented (covered) in this CoordinateSet.

Uses of CoordinateSet in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type CoordinateSet

Modifier and Type	Method and Description
HashMap<ObjectType,CoordinateSet>	DNASequence.getMappedRegions()