Uses of Interface
uk.ac.roslin.ensembl.model.XRef

Packages that use XRef

Package	Description
uk.ac.roslin.ensembl.dao
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.factory
uk.ac.roslin.ensembl.dao.factory
uk.ac.roslin.ensembl.datasourceaware
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.datasourceaware.variation
uk.ac.roslin.ensembl.mapper
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.variation

Uses of XRef in uk.ac.roslin.ensembl.dao

Methods in uk.ac.roslin.ensembl.dao that return types with arguments of type XRef

Modifier and Type	Method and Description
List<? extends XRef>	XRefDAO.getAllXRefs(IdentifiableObject feature)

Methods in uk.ac.roslin.ensembl.dao with parameters of type XRef

Modifier and Type	Method and Description
TreeSet<String>	XRefDAO.getSynonyms(XRef xref)

Uses of XRef in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database with parameters of type XRef

Modifier and Type	Method and Description
TreeSet<String>	DBXRefDAO.getSynonyms(XRef xref)

Uses of XRef in uk.ac.roslin.ensembl.dao.database.factory

Methods in uk.ac.roslin.ensembl.dao.database.factory with parameters of type XRef

Modifier and Type	Method and Description
void	DBDAOSingleSpeciesVariationFactory.addVariationXRef(XRef xref)

Uses of XRef in uk.ac.roslin.ensembl.dao.factory

Methods in uk.ac.roslin.ensembl.dao.factory that return XRef

Modifier and Type	Method and Description
XRef	DAOVariationFactory.getVariationXRef(Integer id)

Methods in uk.ac.roslin.ensembl.dao.factory with parameters of type XRef

Modifier and Type	Method and Description
void	DAOVariationFactory.addVariationXRef(XRef daVariationXref)

Uses of XRef in uk.ac.roslin.ensembl.datasourceaware

Classes in uk.ac.roslin.ensembl.datasourceaware that implement XRef

Modifier and Type	Class and Description
class	DAXRef

Uses of XRef in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type XRef

Modifier and Type	Method and Description
TreeSet<String>	DATranslation.getSynonyms(XRef xref)
TreeSet<String>	DATranscript.getSynonyms(XRef xref)
TreeSet<String>	DAGene.getSynonyms(XRef xref)

Method parameters in uk.ac.roslin.ensembl.datasourceaware.core with type arguments of type XRef

Modifier and Type	Method and Description
protected void	DATranslation.addTypedXRefs(ExternalDBType type, Collection<? extends XRef> xrefs)
protected void	DATranscript.addTypedXRefs(ExternalDBType type, Collection<? extends XRef> xrefs)
protected void	DAGene.addTypedXRefs(ExternalDBType type, Collection<? extends XRef> xrefs)

Uses of XRef in uk.ac.roslin.ensembl.datasourceaware.variation

Classes in uk.ac.roslin.ensembl.datasourceaware.variation that implement XRef

Modifier and Type	Class and Description
class	DAVariationXRef

Uses of XRef in uk.ac.roslin.ensembl.mapper

Methods in uk.ac.roslin.ensembl.mapper with parameters of type XRef

Modifier and Type	Method and Description
List<String>	XRefMapper.getSynonyms(XRef xref)

Uses of XRef in uk.ac.roslin.ensembl.model

Methods in uk.ac.roslin.ensembl.model that return types with arguments of type XRef

Modifier and Type	Method and Description
Set<? extends XRef>	XRefed.getAllXRefs()

Methods in uk.ac.roslin.ensembl.model with parameters of type XRef

Modifier and Type	Method and Description
TreeSet<String>	XRefed.getSynonyms(XRef xref)

Uses of XRef in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core that return XRef

Modifier and Type	Method and Description
XRef	WithDisplayXRef.getDisplayXRef()

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type XRef

Modifier and Type	Method and Description
Set<? extends XRef>	Transcript.getCCDSXRefs()
Set<? extends XRef>	VegaFeature.getVegaXRefs()

Uses of XRef in uk.ac.roslin.ensembl.model.variation

Methods in uk.ac.roslin.ensembl.model.variation that return XRef

Modifier and Type	Method and Description
XRef	Variation.getXRef()