Uses of Class
uk.ac.roslin.ensembl.model.Coordinate.Strand

Packages that use Coordinate.Strand

Package	Description
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.core

Uses of Coordinate.Strand in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type Coordinate.Strand

Modifier and Type	Method and Description
List<DAGene>	DADNASequence.getGenesOnRegion(Integer start, Integer stop, Coordinate.Strand strand) Returns a List of Genes on the specified Region.

Uses of Coordinate.Strand in uk.ac.roslin.ensembl.model

Methods in uk.ac.roslin.ensembl.model that return Coordinate.Strand

Modifier and Type	Method and Description
Coordinate.Strand	Coordinate.getStrand()
static Coordinate.Strand	Coordinate.Strand.strand(Integer i) Static Strand provider returns FORWARD_STRAND for '+1' and REVERSE_STRAND for '-1' - otherwise NULL
static Coordinate.Strand	Coordinate.Strand.valueOf(String name) Returns the enum constant of this type with the specified name.
static Coordinate.Strand[]	Coordinate.Strand.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in uk.ac.roslin.ensembl.model with parameters of type Coordinate.Strand

Modifier and Type	Method and Description
void	Mapping.setSourceCoordinates(Integer start, Integer end, Coordinate.Strand strand) Sets the source coordinate by creating a new Coordinate object form the given parameters.
void	Coordinate.setStrand(Coordinate.Strand s)
void	Mapping.setTargetCoordinates(Integer start, Integer end, Coordinate.Strand strand) Sets the target coordinate by creating a new Coordinate object form the given parameters.

Constructors in uk.ac.roslin.ensembl.model with parameters of type Coordinate.Strand

Constructor and Description
Coordinate(Integer begin, Integer stop, Coordinate.Strand _strand) Full constructor that takes start and stop integer positions and a specified Strand (FORWARD_STRAND, REVERSE_STRAND, otherwise NULL).

Uses of Coordinate.Strand in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core with parameters of type Coordinate.Strand

Modifier and Type	Method and Description
List<? extends Gene>	DNASequence.getGenesOnRegion(Integer start, Integer stop, Coordinate.Strand strand)