Uses of Class
uk.ac.roslin.ensembl.mapper.query.FeatureQuery

Packages that use FeatureQuery

Package	Description
uk.ac.roslin.ensembl.mapper
uk.ac.roslin.ensembl.mapper.core
uk.ac.roslin.ensembl.mapper.variation

Uses of FeatureQuery in uk.ac.roslin.ensembl.mapper

Methods in uk.ac.roslin.ensembl.mapper with parameters of type FeatureQuery

Modifier and Type	Method and Description
List<String>	XRefMapper.getAllSynonyms(FeatureQuery query)
List<DAXRef>	XRefMapper.getXRefs(FeatureQuery query)
DAXRef	XRefMapper.reInitialize(FeatureQuery query)

Uses of FeatureQuery in uk.ac.roslin.ensembl.mapper.core

Methods in uk.ac.roslin.ensembl.mapper.core with parameters of type FeatureQuery

Modifier and Type	Method and Description
List<HashMap>	ExonMapper.getExon(FeatureQuery query)
List<HashMap>	GeneMapper.getGene(FeatureQuery query)
List<DAGene>	GeneMapper.getGenesByName(FeatureQuery query)
List<HashMap>	TranscriptMapper.getTranscript(FeatureQuery query)
DATranslation	TranslationMapper.getTranslation(FeatureQuery query)

Uses of FeatureQuery in uk.ac.roslin.ensembl.mapper.variation

Methods in uk.ac.roslin.ensembl.mapper.variation with parameters of type FeatureQuery

Modifier and Type	Method and Description
List<VariationMapping>	VariationMapper.getMappingsOnParentSequence(FeatureQuery query)
List<DAVariation>	VariationMapper.getUniquelyMappedVariations(FeatureQuery q)
List<DAVariation>	VariationMapper.getVariationsOnParentSequence(FeatureQuery query)