Uses of Interface
uk.ac.roslin.ensembl.model.core.CoordinateSystem

Packages that use CoordinateSystem

Package	Description
uk.ac.roslin.ensembl.dao.coreaccess
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.model
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.database

Uses of CoordinateSystem in uk.ac.roslin.ensembl.dao.coreaccess

Methods in uk.ac.roslin.ensembl.dao.coreaccess that return types with arguments of type CoordinateSystem

Modifier and Type	Method and Description
List<? extends CoordinateSystem>	CoordinateSystemDAO.getCoordinateSystems()

Uses of CoordinateSystem in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database with parameters of type CoordinateSystem

Modifier and Type	Method and Description
List<FeatureType>	DBSingleSpeciesVariationDatabase.getFeaturesForCS(CoordinateSystem coordSys)
List<FeatureType>	DBSingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
List<FeatureType>	DBCollectionCoreDatabase.getFeaturesForCS(Species sp, CoordinateSystem coordSys)
Integer	DBSingleSpeciesVariationDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
Integer	DBSingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
Integer	DBCollectionCoreDatabase.getMaxLengthForFeature(Species sp, ObjectType feature, CoordinateSystem cs)

Uses of CoordinateSystem in uk.ac.roslin.ensembl.datasourceaware.core

Classes in uk.ac.roslin.ensembl.datasourceaware.core that implement CoordinateSystem

Modifier and Type	Class and Description
class	DACoordinateSystem

Fields in uk.ac.roslin.ensembl.datasourceaware.core declared as CoordinateSystem

Modifier and Type	Field and Description
protected CoordinateSystem	DADNASequence.coordSystem

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return CoordinateSystem

Modifier and Type	Method and Description
CoordinateSystem	DADNASequence.getCoordSystem()

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type CoordinateSystem

Modifier and Type	Method and Description
void	DADNASequence.setCoordSystem(CoordinateSystem coordSystem)

Uses of CoordinateSystem in uk.ac.roslin.ensembl.model

Fields in uk.ac.roslin.ensembl.model declared as CoordinateSystem

Modifier and Type	Field and Description
protected CoordinateSystem	Mapping.sourceCoordSystem
protected CoordinateSystem	Mapping.targetCoordSystem

Uses of CoordinateSystem in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core that return CoordinateSystem

Modifier and Type	Method and Description
CoordinateSystem	DNASequence.getCoordSystem()

Methods in uk.ac.roslin.ensembl.model.core with parameters of type CoordinateSystem

Modifier and Type	Method and Description
void	DNASequence.setCoordSystem(CoordinateSystem coordSystem)

Uses of CoordinateSystem in uk.ac.roslin.ensembl.model.database

Methods in uk.ac.roslin.ensembl.model.database that return CoordinateSystem

Modifier and Type	Method and Description
CoordinateSystem	CollectionCoreDatabase.getBuildCoordSystem(Species species, String featureType)
CoordinateSystem	SingleSpeciesCoreDatabase.getBuildCoordSystem(String featureType)
CoordinateSystem	SingleSpeciesCoreDatabase.getChromosomeLevelCoordSystem()
CoordinateSystem	CollectionCoreDatabase.getChromosomeLevelCS(Species species)
CoordinateSystem	SingleSpeciesCoreDatabase.getCSByID(Integer id)
CoordinateSystem	CollectionCoreDatabase.getCSByID(Species species, Integer id)
CoordinateSystem	SingleSpeciesCoreDatabase.getSequenceLevelCoordSystem()
CoordinateSystem	CollectionCoreDatabase.getSequenceLevelCS(Species species)
CoordinateSystem	SingleSpeciesCoreDatabase.getTopLevelCoordSystem()
CoordinateSystem	CollectionCoreDatabase.getTopLevelCS(Species species)

Methods in uk.ac.roslin.ensembl.model.database that return types with arguments of type CoordinateSystem

Modifier and Type	Method and Description
Set<? extends CoordinateSystem>	SingleSpeciesCoreDatabase.getCSForFeature(ObjectType featureType)
Set<? extends CoordinateSystem>	CollectionCoreDatabase.getCSForFeature(Species sp, ObjectType feature)

Methods in uk.ac.roslin.ensembl.model.database with parameters of type CoordinateSystem

Modifier and Type	Method and Description
List<? extends ObjectType>	SingleSpeciesCoreDatabase.getFeaturesForCS(CoordinateSystem coordSys)
List<? extends ObjectType>	CollectionCoreDatabase.getFeaturesForCS(Species sp, CoordinateSystem coordSys)
Integer	SingleSpeciesCoreDatabase.getMaxLengthForFeature(ObjectType featureType, CoordinateSystem cs)
Integer	CollectionCoreDatabase.getMaxLengthForFeature(Species sp, ObjectType feature, CoordinateSystem cs)