Uses of Interface
uk.ac.roslin.ensembl.model.compara.HomologyPairRelationship

Packages that use HomologyPairRelationship

Package	Description
uk.ac.roslin.ensembl.dao.compara
uk.ac.roslin.ensembl.datasourceaware.compara
uk.ac.roslin.ensembl.model.core

Uses of HomologyPairRelationship in uk.ac.roslin.ensembl.dao.compara

Methods in uk.ac.roslin.ensembl.dao.compara that return types with arguments of type HomologyPairRelationship

Modifier and Type	Method and Description
List<? extends HomologyPairRelationship>	HomologyDAO.getHomologiesForGene(Gene g) Specification of Data Access method to retrieve all of the homologies (i.e. to all species) for a given gene with a stableID.
List<? extends HomologyPairRelationship>	HomologyDAO.getHomologiesForGenesBySpecies(List<? extends Gene> genes, Species target_sp, String chrName) Specification of Data Access method to retrieve all of the homologies in the specified target species for a List of genes with stableIDs.

Uses of HomologyPairRelationship in uk.ac.roslin.ensembl.datasourceaware.compara

Classes in uk.ac.roslin.ensembl.datasourceaware.compara that implement HomologyPairRelationship

Modifier and Type	Class and Description
class	DAHomologyPairRelationship
class	InverseHomologyPairRelationshipView

Uses of HomologyPairRelationship in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core that return types with arguments of type HomologyPairRelationship

Modifier and Type	Method and Description
List<? extends HomologyPairRelationship>	Gene.getHomologies()
List<? extends HomologyPairRelationship>	Gene.getHomologies(EnsemblComparaDivision speciesGroup)
List<? extends HomologyPairRelationship>	Gene.getHomologies(EnsemblComparaDivision speciesGroup, Species sp)
List<? extends HomologyPairRelationship>	Gene.getHomologies(Species sp)
List<? extends HomologyPairRelationship>	Gene.getHomologiesWithoutLazyLoad()