Uses of Class
uk.ac.roslin.ensembl.exception.NonUniqueException

Packages that use NonUniqueException

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.datasourceaware.variation
uk.ac.roslin.ensembl.demo
uk.ac.roslin.ensembl.model.core
uk.ac.roslin.ensembl.model.database
uk.ac.roslin.ensembl.test

Uses of NonUniqueException in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database that throw NonUniqueException

Modifier and Type	Method and Description
DBDatabase	DBRegistry.getDatabase(String species_name_or_alias)
DBDatabase	DBRegistry.getDatabase(String speciesNameOrAlias_collectionName_comparaDivision, DatabaseType database_type, String db_version)
DBDatabase	DBRegistry.getDatabase(String species_name_or_alias, String db_version)
String	DBRegistry.getEnsemblNameForAlias(String alias) Looks up the ensembl_genus_species_name for the given alias from the ensemblNameForAliasHash hash of aliases in this Registry.
String	DBRegistry.getGCAssemblyAccessionForAlias(String alias) Looks up the GC_assembly_accession_stem for the given alias of a collectionspecies.
String	DBRegistry.getMostRecentDBVersion(String speciesOrCollection)
DBSpecies	DBRegistry.getMostRecentSpeciesByAlias(String alias_or_name) Returns the most recent Species matching the alias.
DBSpecies	DBRegistry.getSpeciesByAlias(String alias_or_name) Wraps getSetOfSpeciesByAlias(String alias_or_name) to return a single species if the returned Collection has only one member.
DBSpecies	DBRegistry.getSpeciesByAlias(String alias_or_name, String version) Wraps getSetOfEverySpeciesByAlias(String alias_or_name) to return a single species if the returned Collection has only one member with the desired alias and version.

Uses of NonUniqueException in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core that throw NonUniqueException

Modifier and Type	Method and Description
Mapping	DAFeature.getChromosomeMapping() Utility method to pull back a unique chromosomal mapping of this Feature.
Mapping	DAFeature.getChromosomeMapping(Chromosome chr) Utility method to pull back a single mapping of this Feature on a Given chromosome.

Uses of NonUniqueException in uk.ac.roslin.ensembl.datasourceaware.variation

Methods in uk.ac.roslin.ensembl.datasourceaware.variation that throw NonUniqueException

Modifier and Type	Method and Description
Mapping	DAVariation.getChromosomeMapping() Utility method to pull back a unique chromosomal mapping of this Feature.
Mapping	DAVariation.getChromosomeMapping(Chromosome chr) Utility method to pull back a single mapping of this Feature on a Given chromosome.

Uses of NonUniqueException in uk.ac.roslin.ensembl.demo

Methods in uk.ac.roslin.ensembl.demo that throw NonUniqueException

Modifier and Type	Method and Description
void	RegistryFactory.testBacteria()
void	RegistryFactory.testEnsembl()
void	RegistryFactory.testGenomes()

Uses of NonUniqueException in uk.ac.roslin.ensembl.model.core

Methods in uk.ac.roslin.ensembl.model.core that throw NonUniqueException

Modifier and Type	Method and Description
Mapping	Feature.getChromosomeMapping()
Mapping	Feature.getChromosomeMapping(Chromosome chr)

Uses of NonUniqueException in uk.ac.roslin.ensembl.model.database

Methods in uk.ac.roslin.ensembl.model.database that throw NonUniqueException

Modifier and Type	Method and Description
Database	Registry.getDatabase(String species_name_or_alias)
Database	Registry.getDatabase(String species_name_or_alias, DatabaseType database_type, String db_version)
Database	Registry.getDatabase(String species_name_or_alias, String db_version)
String	Registry.getEnsemblNameForAlias(String alias)
Species	Registry.getMostRecentSpeciesByAlias(String alias_or_name)
Species	Registry.getSpeciesByAlias(String alias_or_name)
Species	Registry.getSpeciesByAlias(String alias_or_name, String version)

Uses of NonUniqueException in uk.ac.roslin.ensembl.test

Methods in uk.ac.roslin.ensembl.test that throw NonUniqueException

Modifier and Type	Method and Description
static void	Variation.main(String[] args)
static void	Registry.main(String[] args)
void	Compara.testBacteriaGeneCompara()
void	Compara.testBacteriaSyntenyCompara()
void	Compara.testEnsemblGeneCompara()
void	Registry.testEnsemblRegistry()
void	Compara.testEnsemblSyntenyCompara()
void	Compara.testGenomesGeneCompara()
void	Compara.testGenomesSyntenyCompara()

Constructors in uk.ac.roslin.ensembl.test that throw NonUniqueException

Constructor and Description
Chromosome()
Variation()