Uses of Class
uk.ac.roslin.ensembl.datasourceaware.core.DAChromosome

Packages that use DAChromosome

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.mapper.core

Uses of DAChromosome in uk.ac.roslin.ensembl.dao.database

Fields in uk.ac.roslin.ensembl.dao.database with type parameters of type DAChromosome

Modifier and Type	Field and Description
protected TreeMap<String,TreeMap<String,DAChromosome>>	DBSpecies.chromosomes

Methods in uk.ac.roslin.ensembl.dao.database that return DAChromosome

Modifier and Type	Method and Description
DAChromosome	DBSpecies.getCachedChromosome(DAChromosome chr_in)
DAChromosome	DBCollectionCoreDatabase.getChromosomeByName(Species species, String name)
DAChromosome	DBSpecies.getChromosomeByName(String name)
DAChromosome	DBSingleSpeciesCoreDatabase.getChromosomeByName(String name)
DAChromosome	DBSpecies.getChromosomeByName(String name, String dbVersion)
DAChromosome	DBCollectionSpecies.getChromosomeByName(String name, String dbVersion)

Methods in uk.ac.roslin.ensembl.dao.database that return types with arguments of type DAChromosome

Modifier and Type	Method and Description
TreeMap<String,DAChromosome>	DBSpecies.getChromosomes()
List<DAChromosome>	DBSingleSpeciesCoreDatabase.getChromosomes() Note that Chromosomes are not cached by the Database object - but by the Species Object
List<DAChromosome>	DBCollectionCoreDatabase.getChromosomes(Species species)
TreeMap<String,DAChromosome>	DBSpecies.getChromosomes(String dbVersion)
TreeMap<String,DAChromosome>	DBCollectionSpecies.getChromosomes(String dbVersion)

Methods in uk.ac.roslin.ensembl.dao.database with parameters of type DAChromosome

Modifier and Type	Method and Description
DAChromosome	DBSpecies.getCachedChromosome(DAChromosome chr_in)

Uses of DAChromosome in uk.ac.roslin.ensembl.dao.database.coreaccess

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess that return DAChromosome

Modifier and Type	Method and Description
DAChromosome	DBChromosomeDAO.getChromosomeByName(String name)
DAChromosome	DBChromosomeDAO.getSexLinkedChromosome(Chromosome chr)

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess that return types with arguments of type DAChromosome

Modifier and Type	Method and Description
List<DAChromosome>	DBChromosomeDAO.getChromosomes()

Constructors in uk.ac.roslin.ensembl.dao.database.coreaccess with parameters of type DAChromosome

Constructor and Description
DBAssemblyDAO.PARMappingHandler(List<HashMap> results, DAChromosome source, DAChromosome target)

Constructor parameters in uk.ac.roslin.ensembl.dao.database.coreaccess with type arguments of type DAChromosome

Constructor and Description
DBChromosomeDAO.AssemblyExceptionRowHandler(TreeMap<String,DAChromosome> chrs, List<HashMap> results)

Uses of DAChromosome in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return DAChromosome

Modifier and Type	Method and Description
DAChromosome	DAChromosome.getParChromosome() Returns the sex-linked 'PAR' chromosome associated with this Chromosome.

Uses of DAChromosome in uk.ac.roslin.ensembl.mapper.core

Methods in uk.ac.roslin.ensembl.mapper.core that return DAChromosome

Modifier and Type	Method and Description
DAChromosome	ChromosomeMapper.getChromosomeByName_CoordSysID(HashMap parameter)

Methods in uk.ac.roslin.ensembl.mapper.core that return types with arguments of type DAChromosome

Modifier and Type	Method and Description
List<DAChromosome>	ChromosomeMapper.getChromosomesByCoordSysID(HashMap parameter)