Uses of Class
uk.ac.roslin.ensembl.exception.ConfigurationException

Packages that use ConfigurationException

Package	Description
uk.ac.roslin.ensembl.config
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.demo
uk.ac.roslin.ensembl.model.database

Uses of ConfigurationException in uk.ac.roslin.ensembl.config

Methods in uk.ac.roslin.ensembl.config that throw ConfigurationException

Modifier and Type	Method and Description
DBConnection	RegistryConfiguration.getDb() Returns the DBCOnnection object set on this RegistryConfigurationobject, or throws an ConfigurationException if there is no DBConnection set.
SchemaVersion	RegistryConfiguration.getSchema() Returns the SchemaVersionobject set on this RegistryConfiguration object.
void	RegistryConfiguration.setDBByFile(File dbProperties) Sets DBConnection on this RegistryConfiguration object from a given File of Properties.
void	RegistryConfiguration.setDBProperties(Properties dbProperties) Sets DBConnection on this RegistryConfiguration object from a given set of Properties.
void	RegistryConfiguration.setSchemaByFile(File schemaMappings) Sets the SchemaVersion object on this RegistryConfiguration object using a File with Properties values.
void	RegistryConfiguration.setSchemaProperties(Properties schemaProperties) Sets the SchemaVersion object on this RegistryConfiguration object using the given Properties.

Constructors in uk.ac.roslin.ensembl.config that throw ConfigurationException

Constructor and Description
DBConnection(DBConnection.DataSource datasource)
DBConnection(DBConnection.DataSource datasource, Properties local_datasource)
RegistryConfiguration(DBConnection.DataSource type) Constructs a RegistryConfiguration object after calling setType, which will set the DBConnection if DataSource is of a known valid type.
SchemaVersion()
SchemaVersion(Properties localMappingRules)

Uses of ConfigurationException in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database that throw ConfigurationException

Modifier and Type	Method and Description
static DBRegistry	DBRegistry.createRegistryForConfiguration(RegistryConfiguration conf)
static DBRegistry	DBRegistry.createRegistryForDataSource(DBConnection.DataSource type)
static DBRegistry	DBRegistry.createRegistryForDataSourceAtReleaseVersion(DBConnection.DataSource type, Integer release)
static DBRegistry	DBRegistry.createRegistryForDataSourceCurrentRelease(DBConnection.DataSource type)
static DBRegistry	DBRegistry.createUninitializedRegistryForConfiguration(RegistryConfiguration conf)
static DBRegistry	DBRegistry.createUninitializedRegistryForDataSource(DBConnection.DataSource type)
int	DBRegistry.getHighestEnsemblSchemaVersion()
int	DBRegistry.getHighestReleaseVersion()
void	DBRegistry.initialize(Integer release) private initialisation method for the registry which connects to ensembl via a DBDatasourceDAO and retrieves details on all the current tables and creates database objects of the appropriate type for each.
DBDatabase	DBRegistry.makeDatabase(String db_name)
void	DBRegistry.setConfiguration(DBConnection.DataSource type)
void	DBRegistry.setConfiguration(RegistryConfiguration conf)

Constructors in uk.ac.roslin.ensembl.dao.database that throw ConfigurationException

Constructor and Description
DBCollectionCoreDatabase(String db_name, EnsemblDBType type, Registry registry)
DBCollectionDatabase(String db_name, EnsemblDBType type, Registry registry)
DBCollectionSpecies(DBCollectionCoreDatabase database)
DBComparisonDatabase(String db_name, EnsemblDBType type, DBRegistry registry)
DBDatabase(String db_name, EnsemblDBType type, Registry registry)
DBSingleSpeciesCoreDatabase(String db_name, EnsemblDBType type, Registry registry)
DBSingleSpeciesDatabase(String db_name, EnsemblDBType type, Registry registry)
DBSingleSpeciesVariationDatabase(String db_name, EnsemblDBType type, Registry registry)

Uses of ConfigurationException in uk.ac.roslin.ensembl.demo

Methods in uk.ac.roslin.ensembl.demo that throw ConfigurationException

Modifier and Type	Method and Description
void	RegistryFactory.testBacteria()
void	RegistryFactory.testEnsembl()
void	RegistryFactory.testGenomes()
void	RegistryFactory.testSchemaVersion()

Uses of ConfigurationException in uk.ac.roslin.ensembl.model.database

Methods in uk.ac.roslin.ensembl.model.database that throw ConfigurationException

Modifier and Type	Method and Description
int	Registry.getHighestEnsemblSchemaVersion()
int	Registry.getHighestReleaseVersion()
Database	Registry.makeDatabase(String db_name)