Uses of Class
uk.ac.roslin.ensembl.datasourceaware.variation.DAVariation

Packages that use DAVariation

Package	Description
uk.ac.roslin.ensembl.dao.database.variation
uk.ac.roslin.ensembl.datasourceaware.core
uk.ac.roslin.ensembl.mapper.variation

Uses of DAVariation in uk.ac.roslin.ensembl.dao.database.variation

Methods in uk.ac.roslin.ensembl.dao.database.variation that return DAVariation

Modifier and Type	Method and Description
DAVariation	DBVariationDAO.getUniquelyMappedVariation(String variationName)

Methods in uk.ac.roslin.ensembl.dao.database.variation that return types with arguments of type DAVariation

Modifier and Type	Method and Description
List<DAVariation>	DBVariationDAO.getUniquelyMappedVariations(List<String> variationNames)
List<DAVariation>	DBVariationDAO.getVariationsOnRegion(DNASequence region, Coordinate coords)

Uses of DAVariation in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return types with arguments of type DAVariation

Modifier and Type	Method and Description
List<DAVariation>	DADNASequence.getVariationsOnRegion(Coordinate coord) Returns list of Variations on specified Coordinate Region.
List<DAVariation>	DADNASequence.getVariationsOnRegion(Integer start, Integer stop) Returns list of Variations on specified Region.

Uses of DAVariation in uk.ac.roslin.ensembl.mapper.variation

Methods in uk.ac.roslin.ensembl.mapper.variation that return types with arguments of type DAVariation

Modifier and Type	Method and Description
List<DAVariation>	VariationMapper.getUniquelyMappedVariations(FeatureQuery q)
List<DAVariation>	VariationMapper.getVariationsOnParentSequence(FeatureQuery query)