Uses of Class
uk.ac.roslin.ensembl.datasourceaware.core.DATranscript

Packages that use DATranscript

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.datasourceaware.core

Uses of DATranscript in uk.ac.roslin.ensembl.dao.database

Methods in uk.ac.roslin.ensembl.dao.database that return DATranscript

Modifier and Type	Method and Description
DATranscript	DBSpecies.getTranscriptByStableID(String stableID)
DATranscript	DBSpecies.getTranscriptByStableID(String stableID, String dbVersion)
DATranscript	DBCollectionSpecies.getTranscriptByStableID(String stableID, String dbVersion)

Methods in uk.ac.roslin.ensembl.dao.database that return types with arguments of type DATranscript

Modifier and Type	Method and Description
List<DATranscript>	DBSpecies.getTranscriptsForCcdsID(String ccdsID)
List<DATranscript>	DBSpecies.getTranscriptsForCcdsID(String ccdsID, String dbVersion) Method returns a List of Transcripts that have been mapped to the given CCDS Identifier (This may be the CCDS accession or the CCDS accession.version).
List<DATranscript>	DBCollectionSpecies.getTranscriptsForCcdsID(String ccdsID, String dbVersion) Method returns a List of Transcripts that have been mapped to the given CCDS Identifier (This may be the CCDS accession or the CCDS accession.schemaVersion).
List<DATranscript>	DBSpecies.getTranscriptsForVegaID(String vegaID) Method returns a List of Transcripts that have been mapped to the given Vega Identifier.
List<DATranscript>	DBSpecies.getTranscriptsForVegaID(String vegaID, String dbVersion) Method returns a List of Transcripts that have been mapped to the given Vega Identifier.
List<DATranscript>	DBCollectionSpecies.getTranscriptsForVegaID(String vegaID, String dbVersion) Method returns a List of Transcripts that have been mapped to the given Vega Identifier.

Uses of DATranscript in uk.ac.roslin.ensembl.dao.database.coreaccess

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess that return DATranscript

Modifier and Type	Method and Description
DATranscript	DBTranscriptDAO.TranscriptRowHandler.getObjectResult()
DATranscript	DBTranscriptDAO.getTranscriptByID(Integer id)
DATranscript	DBTranscriptDAO.getTranscriptByStableID(String stableID)

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess that return types with arguments of type DATranscript

Modifier and Type	Method and Description
List<DATranscript>	DBTranscriptDAO.TranscriptRowHandler.getListResult()
List<DATranscript>	DBTranscriptDAO.getTranscriptsForCcdsID(String id) Returns a list of Ensembl Transcripts matching the query CCDS ID string.
List<DATranscript>	DBTranscriptDAO.getTranscriptsForGene(Gene gene)
List<DATranscript>	DBTranscriptDAO.getTranscriptsForVegaID(String id) Returns a list of Ensembl Transcripts matching the query VegaID string.

Constructors in uk.ac.roslin.ensembl.dao.database.coreaccess with parameters of type DATranscript

Constructor and Description
DBExonDAO.ExonRowHandler(List<HashMap> results, DATranscript t)

Uses of DATranscript in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return DATranscript

Modifier and Type	Method and Description
DATranscript	DAGene.getCanonicalTranscript()
DATranscript	DATranslation.getTranscript()
DATranscript	DAExon.getTranscript()

Methods in uk.ac.roslin.ensembl.datasourceaware.core that return types with arguments of type DATranscript

Modifier and Type	Method and Description
Collection<DATranscript>	DAGene.getTranscripts()

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type DATranscript

Modifier and Type	Method and Description
void	DAGene.setCanonicalTranscript(DATranscript transcript)