Uses of Class
uk.ac.roslin.ensembl.dao.database.DBCollectionSpecies

Packages that use DBCollectionSpecies

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.factory

Uses of DBCollectionSpecies in uk.ac.roslin.ensembl.dao.database

Fields in uk.ac.roslin.ensembl.dao.database with type parameters of type DBCollectionSpecies

Modifier and Type	Field and Description
protected TreeMap<String,DBCollectionSpecies>	DBRegistry.collectionspeciesHashByGCAccession
protected TreeMap<String,DBCollectionSpecies>	DBRegistry.oldstyle_collectionspeciesHashByDBName

Methods in uk.ac.roslin.ensembl.dao.database that return DBCollectionSpecies

Modifier and Type	Method and Description
DBCollectionSpecies	DBRegistry.getCSpeciesByGCAccessionStem(String key)

Methods in uk.ac.roslin.ensembl.dao.database that return types with arguments of type DBCollectionSpecies

Modifier and Type	Method and Description
List<DBCollectionSpecies>	DBRegistry.getCollectionSpecies() Returns the combined list of DBCollectionSpecies that are indexed by dbstylename (old_style_ and those indexed by GCAssemblyAccession (new style, post v16)
List<DBCollectionSpecies>	DBRegistry.getGCAccessionedCollectionSpecies() Utility method to return only those DBCOllectionSpecies that possess and are indexed by a GCAssemblyAccession(Stem or Chain)
List<DBCollectionSpecies>	DBRegistry.getNamedCollectionSpecies() Utility method to return only those DBCOllectionSpecies that do not possess and are therefore not indexed by a GCAssemblyAccession but bey dbstylename
TreeSet<DBCollectionSpecies>	DBCollection.getSpecies()

Uses of DBCollectionSpecies in uk.ac.roslin.ensembl.dao.database.factory

Methods in uk.ac.roslin.ensembl.dao.database.factory that return DBCollectionSpecies

Modifier and Type	Method and Description
DBCollectionSpecies	DBDAOCollectionFactory.getSpecies()