Uses of Class
uk.ac.roslin.ensembl.config.AssemblyExceptionType

Packages that use AssemblyExceptionType

Package	Description
uk.ac.roslin.ensembl.config
uk.ac.roslin.ensembl.datasourceaware.core

Uses of AssemblyExceptionType in uk.ac.roslin.ensembl.config

Fields in uk.ac.roslin.ensembl.config declared as AssemblyExceptionType

Modifier and Type	Field and Description
static AssemblyExceptionType	AssemblyExceptionType.HAP
static AssemblyExceptionType	AssemblyExceptionType.PAR
static AssemblyExceptionType	AssemblyExceptionType.PATCH_FIX
static AssemblyExceptionType	AssemblyExceptionType.PATCH_NOVEL
static AssemblyExceptionType	AssemblyExceptionType.UNKNOWN

Methods in uk.ac.roslin.ensembl.config that return AssemblyExceptionType

Modifier and Type	Method and Description
static AssemblyExceptionType	AssemblyExceptionType.getType(String name)

Methods in uk.ac.roslin.ensembl.config that return types with arguments of type AssemblyExceptionType

Modifier and Type	Method and Description
static Collection<AssemblyExceptionType>	AssemblyExceptionType.values()

Uses of AssemblyExceptionType in uk.ac.roslin.ensembl.datasourceaware.core

Methods in uk.ac.roslin.ensembl.datasourceaware.core with parameters of type AssemblyExceptionType

Modifier and Type	Method and Description
void	DAChromosome.addException(AssemblyExceptionType type, Mapping mapping) public method called by the DA infrastructure when adding an AssemblyException mapping of the indicated type.
MappingSet	DAChromosome.getAssemblyExceptions(AssemblyExceptionType type) Returns a MappingSet of AssemblyExceptions of the indicated AssemblyExceptionType.