Uses of Class
uk.ac.roslin.ensembl.dao.database.DBSpecies

Packages that use DBSpecies

Package	Description
uk.ac.roslin.ensembl.dao.database
uk.ac.roslin.ensembl.dao.database.coreaccess
uk.ac.roslin.ensembl.dao.database.factory

Uses of DBSpecies in uk.ac.roslin.ensembl.dao.database

Subclasses of DBSpecies in uk.ac.roslin.ensembl.dao.database

Modifier and Type	Class and Description
class	DBCollectionSpecies

Fields in uk.ac.roslin.ensembl.dao.database declared as DBSpecies

Modifier and Type	Field and Description
protected DBSpecies	DBSingleSpeciesDatabase.species

Fields in uk.ac.roslin.ensembl.dao.database with type parameters of type DBSpecies

Modifier and Type	Field and Description
protected TreeMap<String,DBSpecies>	DBRegistry.speciesHash

Methods in uk.ac.roslin.ensembl.dao.database that return DBSpecies

Modifier and Type	Method and Description
DBSpecies	DBRegistry.getMostRecentSpeciesByAlias(String alias_or_name) Returns the most recent Species matching the alias.
DBSpecies	DBSingleSpeciesDatabase.getSpecies()
DBSpecies	DBRegistry.getSpeciesByAlias(String alias_or_name) Wraps getSetOfSpeciesByAlias(String alias_or_name) to return a single species if the returned Collection has only one member.
DBSpecies	DBRegistry.getSpeciesByAlias(String alias_or_name, String version) Wraps getSetOfEverySpeciesByAlias(String alias_or_name) to return a single species if the returned Collection has only one member with the desired alias and version.
DBSpecies	DBRegistry.getSpeciesByEnsemblName(String ensemblName)

Methods in uk.ac.roslin.ensembl.dao.database that return types with arguments of type DBSpecies

Modifier and Type	Method and Description
Set<DBSpecies>	DBRegistry.getPanComparaSpecies(String dbVersion)
List<DBSpecies>	DBRegistry.getSpecies() Fetches the list of all DBSpecies objects for this Registry.

Uses of DBSpecies in uk.ac.roslin.ensembl.dao.database.coreaccess

Fields in uk.ac.roslin.ensembl.dao.database.coreaccess declared as DBSpecies

Modifier and Type	Field and Description
protected DBSpecies	DBCoreObjectDAO.species

Methods in uk.ac.roslin.ensembl.dao.database.coreaccess that return DBSpecies

Modifier and Type	Method and Description
DBSpecies	DBCoreObjectDAO.getSpecies()

Uses of DBSpecies in uk.ac.roslin.ensembl.dao.database.factory

Fields in uk.ac.roslin.ensembl.dao.database.factory declared as DBSpecies

Modifier and Type	Field and Description
protected DBSpecies	DBDAOSpeciesFactory.species

Methods in uk.ac.roslin.ensembl.dao.database.factory that return DBSpecies

Modifier and Type	Method and Description
DBSpecies	DBDAOSpeciesFactory.getSpecies()